Haloterrigena turkmenica: Htur_2560
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Entry
Htur_2560 CDS
T01154
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
htu
Haloterrigena turkmenica
Brite
KEGG Orthology (KO) [BR:
htu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
htu03016
]
Htur_2560
Enzymes [BR:
htu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Htur_2560
Transfer RNA biogenesis [BR:
htu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Htur_2560
Prokaryotic type
tRNA splicing ligases
Htur_2560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADB61437
UniProt:
D2RW08
LinkDB
All DBs
Position
complement(2629332..2630798)
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AA seq
488 aa
AA seq
DB search
MTTFDADGITLEKVREYVWEIPQEGDMRAPARVLASEALLEEIKEDKTLEQITNTTHLPG
ITNYAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCGVRMMRTNLTYDELQGR
EEELVDSLFTNVPSGLGGGGIVEAGVDTVEEILERGVDWALEHGHAVEEDLLHCEDEGMR
EGADADKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGDVGEAYGLEEDQIVVLIHC
GSRGLGHQTCNDYLRKIEKQHQGLLNQLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVN
RQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVNDDGEQRELYVHRKGAT
RAFPAGHPEVPKAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQ
AKNEYWGGDVQQELEEQDQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVART
FPVCNIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgttcgacgccgacggcatcacgctcgagaaagtgcgtgagtacgtctgggag
attccacaggagggcgacatgcgcgcgccggcgcgggtgctcgccagcgaagcgctgctc
gaggagattaaagaggacaagacgctcgaacagatcacgaacacgactcacctccccggc
atcaccaactacgcgatctgtatgcccgacggccaccaaggctacggcttcccggtcgga
ggcgtgggtgcactcgacgcggaaaacggctgtatttcgccgggagcggtcggctacgac
atcaactgcggagtccggatgatgcggacgaacctgacctacgacgagctacagggccgc
gaggaggaactcgtcgactcgctgtttacgaacgttccgtcaggtctcggtggcggcggc
atcgtcgaggccggcgtcgacaccgtcgaggagatcctcgagcgcggcgtcgactgggcg
ctcgagcacggccacgccgtcgaggaggacttgctccactgcgaggacgaggggatgcgc
gagggcgccgacgccgacaaggtcagccagaaggccaaagaccgcgggaagaaccagatc
ggctcgctgggctcgggcaaccacttcctcgaggtccagcgcgtcacggacgtcttcgac
ggcgacgtgggcgaggcctacggcctcgaggaagaccagatcgtcgtcctgatccactgt
ggctcccgcgggctgggccaccagacgtgcaacgactacctgcgcaagatcgagaagcaa
catcaggggctgctgaaccagctgcccgacaaggaactcgcggccgcgcccgcgggctcg
cagctcgccgaggactactacgcggcgatgaacgcggcgatcaacttcgcgtgggtcaac
cgccagctgatcatgcaccgcacgcggcaggtcttcgagcgcgtcttcgaccgctcgtgg
gaggagatggacatgcacctgctgtacgacgtggcgcacaacatcgcgaagaaggaaacg
cacaccgtgaacgatgacggcgagcagcgcgaactctacgtccaccgcaagggcgctacg
cgggcgttccccgccggccaccccgaggttccgaaagcttaccgcgacgttggccagccg
gtcatcatccccggcagcatgggcgccggcagctacgtcctccggggcggcgagaactcg
atggacctcaccttcggctcgacggcccacggcgcgggtcgcctgatgagccgcacccag
gccaaaaacgagtactggggcggcgacgtccagcaggaactcgaggagcaggaccagatc
tatgtcaaggcccagtcgggcgcgacggtcgccgaggaggctcccggcgtctacaaggac
gtcgacgaagtcgtccgcgtctccgacgaactcgggatcggcgacaaggtggcgcggacg
ttccccgtctgtaacatcaaggggtaa
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