Billgrantia tianxiuensis: EKK97_05265
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Entry
EKK97_05265 CDS
T08051
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
htx
Billgrantia tianxiuensis
Pathway
htx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
htx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EKK97_05265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htx03400
]
EKK97_05265 (ligD)
Enzymes [BR:
htx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EKK97_05265 (ligD)
DNA repair and recombination proteins [BR:
htx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EKK97_05265 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QHC49147
UniProt:
A0A6I6SNL1
LinkDB
All DBs
Position
complement(1113023..1115572)
Genome browser
AA seq
849 aa
AA seq
DB search
MERLEEYRRKRDFTRTREPAGEKQGKTTPGHLYVMHKHAASHDHFDLRLEQDGVLRSWAL
PKGPSLEPGEKRLAVEVEDHPLEYGEFEGVIPEKAYGGGTVMLWDRGTWKLKGKPKPDRI
DIELDGERLKGSWTLTRMSGKRQDKHGRNWLLIKRHDDKSRMEDSLTVELDASIASGRSM
QEIAEDRDATWTSSANGEAPPSPPDPSVLTGARRAKLPREATPQLATLAREVPAQGKWVH
EIKLDGYRLLARIEKGDVRLITRNGKDWTHRFPEIVRALEPLPVDSALLDGEVVAMGSDG
ITRFGQLQEALSSGRTAALVYQIFDLPYLAGYALASVPLLQRKRTLEALLGAADMRTGTI
RYSDHIETHGSAFHERACQMGLEGIISKRADSRYQQKRSRDWLKVKCVSHEEFVIGGYTD
PSGSRSGFGSLLMGAYGKQGLVYAGRVGTGFSNRLLERLSATLQELEISRSPFHGSVPDS
RSVHWVRPELVIEVEFTERTRDGRLRHPAFRGLREDRNPEEIRMTPTKEMAAEGTPEQEA
KPGKSAARKRKDETSLLGVRLTHPDRVLFPEQGLTKLDLARFYEQIQEWVLPHLARRPLS
LVRCPQGRNDECFFQKHPRSAIPDSVPRIDVPEKKGSAEYVYVETAADLIGLVQAGALEI
HPWGSRIDHLEQPDSLVFDLDPDQGIAWKEILRVAGTLRERLESLGLTPFLRTTGGKGLH
LVVPLEPSAEWEQAKAFAKGVAEAHAKDDPKRLTTNMSKAKREGRIFLDYLRNGRGATAV
ASYTVRARENAPVAVPIRWDELNAALRADRYNVQNLRRRLSALREDPWAGFDEAARPLDA
QLLKIMGVK
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggaacgactcgaggagtaccgtcgcaagcgcgacttcacgcgaacgcgcgagcccgcc
ggagaaaagcagggtaagaccacaccgggtcatctctacgtgatgcacaagcatgcggcg
agccatgaccatttcgacctgcgcctggagcaggatggcgtgctcaggagctgggcgcta
cccaaaggaccgagcctcgagcccggcgagaagcgtctggccgtagaggtggaagaccat
ccgctggagtatggtgagttcgagggcgtgattcccgagaaagcctatggcggcggcacc
gtcatgctgtgggatcgcggcacctggaaactcaagggtaaacccaagccggatcgaatc
gacatcgaactcgacggcgaacggctaaagggcagttggaccctgacccgcatgagcggc
aagcgccaggacaagcacgggcgcaactggctgctgatcaagcgccacgacgacaagtcg
cgcatggaggattcgctcacggtcgaactcgacgcgagcattgccagcggccgcagcatg
caggagatcgccgaggatcgcgatgccacctggacctccagtgccaatggcgaggcccct
ccctccccacccgaccccagcgttctgacaggcgcccgacgtgcgaagctgccgcgcgaa
gcgacgccgcagcttgccaccctggcacgcgaggtgccggcccaaggcaaatgggtccac
gagatcaagctcgacggctatcgcctgttggcccgcatcgaaaagggcgatgtgcgcctg
atcacccgcaacggcaaggactggacccaccgctttcccgagatcgtccgggcgctcgag
ccgctgccggtggactcggcactgctcgacggcgaggtggtggccatgggcagcgacggc
atcactcgcttcggccagttgcaagaggcgctctccagcggccgcaccgccgctctcgtc
taccagatcttcgacctgccctacctggccgggtatgccctggccagcgtgccgctactc
cagcgcaagcgcaccctcgaggcactgctcggcgctgccgacatgcgaaccggcacgatt
cgctactccgaccatatcgagactcacggcagcgccttccatgagcgcgcctgccagatg
ggactggaaggcatcatcagcaagcgtgccgacagtcgctaccagcagaagcgcagccgt
gattggctcaaggtcaagtgcgtcagccacgaggagttcgtgatcggcggctataccgac
cccagcggctcacgtagcggtttcggttcgctgctgatgggcgcctacggcaagcagggg
ctggtctatgccgggcgcgtaggcaccggcttcagcaaccgtctactggagcgactcagc
gctaccctgcaggaactcgagatttcccgctcccccttccatggcagcgtgccggatagc
cgctcggtgcactgggtacgtcccgaactggtgatcgaagtggagttcaccgaacgcacc
cgcgacggccgcctgcgccacccggcctttcgcggcctgcgcgaggatcgcaacccggag
gagatccgcatgaccccgaccaaagagatggccgccgaaggcacgccggaacaggaagcc
aagccgggcaagtcagccgcacgcaagcgcaaggacgaaacctcgctgcttggcgtgcgc
ctcacccaccccgaccgcgtgctatttcccgagcagggcctgaccaagctcgacctggcg
cgcttctacgagcaaattcaggagtgggtgctgcctcacctggcccgccggccactgtcg
ctggtgcgctgcccccagggacgcaacgacgaatgtttcttccagaagcacccgcgcagc
gccattcccgacagcgtgccgcgcatcgacgtgccggagaagaaaggcagcgccgagtac
gtctacgtcgaaacggccgccgacctgatcggcctggtgcaggcaggtgcgctggagatc
cacccctggggcagccgcattgatcatctcgaacagcctgacagcctggtgttcgacctc
gaccccgaccaaggcatcgcctggaaggagattctgcgtgttgccggcaccttgcgcgag
cgcctcgagtcactgggactcacgccgttcctgcgcaccaccggcggcaaggggttgcac
ctggtggtgccgctcgagcccagcgccgagtgggagcaggccaaggccttcgccaaggga
gtggccgaagcgcatgccaaggacgacccgaagcgcctgaccaccaacatgtccaaggcc
aagcgcgaagggcgaatcttcctcgactacctgcgtaacggacgtggcgccacggcggtg
gcctcctacacggtacgcgcgcgcgagaacgccccggtggcggtgccgattcgctgggac
gagctcaacgccgcactgcgcgccgaccgctacaacgtgcagaacctgcgccgccgtctc
tccgccctgcgcgaggatccctgggcgggtttcgacgaggcggcacgcccgctggatgcc
cagttgctcaagatcatgggcgtgaaatga
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