Billgrantia tianxiuensis: EKK97_20605
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Entry
EKK97_20605 CDS
T08051
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
htx
Billgrantia tianxiuensis
Pathway
htx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
htx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EKK97_20605 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htx03021
]
EKK97_20605 (rpoC)
03400 DNA repair and recombination proteins [BR:
htx03400
]
EKK97_20605 (rpoC)
Enzymes [BR:
htx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EKK97_20605 (rpoC)
Transcription machinery [BR:
htx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EKK97_20605 (rpoC)
DNA repair and recombination proteins [BR:
htx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EKK97_20605 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QHC51525
UniProt:
A0A6I6SUE1
LinkDB
All DBs
Position
complement(4414585..4418805)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAIQALLKDIDLSEEVDRLREEIPQTNSETKIKKLSKRLKLLEAFLQSGNDPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQANGQASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGDPIIVPSQDVVLGLYYMTREKINAKGEGMVFSNLNEVERAFGTQ
SVSLHARVKVRLTEILIDEETGEQSTERTLYDTTVGRALLFRILPDGVPFELVDQPMKKK
AISKLLNEVYRRAGLKATVIFADQLMYTGFRMATWSGASIGVNDFVIPEAKSEIVEAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMAGISKETVIDRNGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITETDCGTEQGLTLHPVIEGGDIIVSLAQRV
LGRVVAQDVIDPSTEEVLIEKGALLDEAWCERLDTMGVDEIVVRSAITCESTHGVCSSCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGKVR
LHNMKFVERTDGKLVVVSRSSALAVADEHGREREYYKLPYGAELSIKDGEAVEAGQMVAK
WDPHTHPIIAEVEGKVQYVDMVDGVTIHRSVDEMTGLSSIEVIESAARPQAGRDSRPMIL
LTDESGEPVSVAGSNTPVQYLLPGKAIVSVDNGSQIGIGEIVARIPVEASGNKDITGGLP
RVADLFEARKPKEPAILAEISGTISFGKETKGKRRLTITPEDGGDPFEMLIPKWRQIAVF
EGETVEKGEVISDGPSNPHDILRLLGVAELAKYITAEIQEVYRLQGVGINDKHIEVIVRQ
MLRKVEITDSGDSEFIPGDQVELVKVLEQNALLEQAEKFPAKYQRVLLGITKASLATESF
ISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAHHQERRRKREDTERL
LHPSAFDVEQELGAQLTALDSDDDEL
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcagtcacagtccgaagagttcgacgcgatc
aagatttcgctcgcctctccggacatgattcgctcctggtcctacggcgaggtcaagaag
cccgagaccatcaactaccgcaccttcaagccggagcgggacgggctgttctgtgccaag
atcttcggtccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcat
cgcggcatcatctgcgagaagtgtggcgtcgaggtgaccaaggccgccgtgcgccgcgag
cgcatgggccatatcgaactggccagcccggtggcccacatctggttcctcaagtcactg
ccgtcgcgtatcggcatgttcctcgacatgaccctgcgtgacatcgagcgggtgctctat
ttcgagagcttcgtggtgatcgatccgggcatgaccacgctcgagcgcggccagctgctc
aacgacgagcagtacttcgaggcactcgaggagttcggtgacgacttcgacgcccgcatg
ggcgccgaggcgatccaggcgctgctcaaggacatcgacctctccgaggaggttgatcgc
ctgcgcgaggagattccccagaccaactccgagaccaagatcaagaagctctccaagcgg
ctcaagctgctggaggccttcctgcagtcgggcaacgacccggcgtggatggtcatggaa
gtgctgcctgtgctgccgccggacctgcgtccgctggtgccgctggacggcggtcgcttc
gccacctccgacctcaacgacctataccgtcgggtgatcaaccgtaacaaccgcctcaag
cggctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagcggtcgatgcgctgctcgacaacggccgccgcggccgcgccattacggggtcgaat
aagcgtcctctcaaatccttggccgatatgatcaagggcaagcagggccgcttccgtcag
aacctgctgggcaagcgcgtcgactactccggccgttcggtcatcaccgtcggtccgacc
ctgcgtctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccgttc
atctattccaagctgcaggccaacggccaggcgtccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgcccgaggtgtgggacatcctcgccgacgtcatccgcgaacacccg
gtgctgctcaaccgcgccccgaccctgcaccgtctcggcatccaggccttcgagccgctg
ctgatcgaaggcaaggcgatccagctgcacccgctggtgtgtgccgcctacaacgccgac
ttcgacggtgaccagatggcagtgcacgtaccgctgacgctggaagcccaactcgaggcg
cgggcgctgatgatggccaccaataacgtgctgtcgccggccaacggtgatccgatcatc
gtaccgtcccaggacgtggtactgggtctgtattacatgacccgcgagaagatcaacgcc
aagggcgagggaatggtgttctccaacctcaacgaggtggagcgagccttcggtacccag
agcgtgtcgctgcatgcccgggtcaaggtgcgtctgaccgagatcctcattgatgaggaa
accggcgagcagagcactgagcgcaccctctatgacaccaccgtaggtcgtgcgctgctg
ttccgcatcctgcctgacggggtgccgttcgagctggtcgatcagccgatgaagaagaag
gcgatctccaagctgctcaacgaggtgtatcgccgtgccggtctcaaggccacggtgatt
ttcgccgaccaactgatgtacaccggtttccgcatggcgacctggtccggcgcctccatc
ggcgtcaacgacttcgtcatccccgaagccaagagcgagatcgtcgaggctgccgaggca
gaggtcaaggagatcgaagatcagttctcctccggtctcgtcaccgccggcgagaagtac
aacaaggtcatcgacatctggtccaaggccaatgacaaggtggccaaggcgatgatggcg
ggcatctccaaggagaccgtgatcgatcgcaacggcaacgaggtggagcaggactcgttc
aacagcgtgttcatcatggccgactccggcgctcgcggtagcgcggcccagatccgtcag
ctggcgggtatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatc
gtcgccaacttccgcgaaggtctgaacgtactgcagtacttcatctcgacccacggtgcg
cgtaagggtctggcggataccgcactcaagaccgccaactctggttatctgactcgccgt
ctggtcgacgtggcccaggacatggtcatcaccgagaccgattgtggcaccgagcagggg
ctgaccctgcatccggtcatcgagggcggcgacatcatcgtctccctggctcagcgcgtc
ctgggccgcgtggtggcccaggacgtcatcgatcccagcaccgaagaggtgttgatcgag
aagggtgcgctgctcgacgaagcttggtgcgagcgcctggataccatgggtgtcgacgag
atcgtggtgcgcagtgccattacctgtgaatcgacccatggcgtctgctcgtcgtgctac
ggccgcgatctggcgcgggggcatcaggtcaacatcggcgaagcggtgggtgtcatcgct
gcccagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggcggt
gcggcatcgcgcgcctcggcggtggacagcgtgcaggtgaagcacggcggcaaggtgcgt
ctgcacaacatgaagttcgtcgagcgcaccgatggcaagctggtggtggtctcccgctcc
agcgccctggcggtggccgacgagcacggccgcgagcgtgagtactacaagctgccctac
ggtgccgagctgtcgatcaaggatggtgaggcggtcgaggccgggcagatggtggccaag
tgggatccgcacacccacccgatcatcgctgaggtcgagggcaaggtgcagtacgtcgac
atggtcgacggcgtcaccatccaccgcagcgtagacgagatgaccggcctctcttccatc
gaggtgatcgagtcggcggcgcgtccgcaggccggccgtgatagccgtccgatgatcctg
ctcaccgacgagagcggcgagccggtcagcgtggcaggctccaacactccggtgcagtat
ctgctgccgggcaaggcgatcgtttcggtcgacaacggttcccagatcggtatcggtgag
atcgttgcgcgaattccggtggaagcgtccggcaacaaggacatcaccggtggtctgccc
cgtgtggccgacctgttcgaagcgcgcaagccgaaggagccggccatcctcgccgagatc
agcggtacgatcagcttcggcaaggaaaccaagggcaagcgtcgcctgacgatcacgccg
gaagacggtggcgacccgttcgagatgctgatcccgaagtggcgccagatcgccgtgttc
gaaggcgagacggtggagaagggcgaggtgatctccgacggtccgagcaacccccacgac
atcctgcgactgctgggcgtggcggaactggccaagtacatcaccgccgagatccaggag
gtctaccggctgcaaggtgtaggcatcaacgacaagcacatcgaagtgatcgtgcgtcag
atgctgcgcaaggtcgagatcaccgactcgggtgactcggagttcatcccgggcgaccag
gtcgagttggtcaaggttctcgagcagaatgcactgctggagcaggccgagaaattcccg
gccaagtatcagcgtgtgctgctgggtatcaccaaggccagcctggccaccgagtcgttc
atttccgcggcctccttccaggagaccacgcgggtcctgaccgaggcggcggtgaccggc
aagcgtgattatctgcgcggtttgaaagagaacgtggtggttggtcgcctgatcccggca
gggacggggctggcccatcatcaggagcgtcgtcgcaagcgggaagataccgagcgtctg
ctccatccgtcggccttcgatgtcgagcaggagctgggcgcccagctcaccgctctcgac
tcggacgacgacgagctgtaa
DBGET
integrated database retrieval system
