Helicobacter typhlonius: BN2458_PEG1608
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Entry
BN2458_PEG1608 CDS
T04174
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hty
Helicobacter typhlonius
Pathway
hty03410
Base excision repair
hty03430
Mismatch repair
hty03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BN2458_PEG1608
03430 Mismatch repair
BN2458_PEG1608
03440 Homologous recombination
BN2458_PEG1608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hty03400
]
BN2458_PEG1608
DNA repair and recombination proteins [BR:
hty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BN2458_PEG1608
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BN2458_PEG1608
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN2458_PEG1608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
CUU40491
UniProt:
A0A0S4PW38
LinkDB
All DBs
Position
I:complement(1451172..1452833)
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AA seq
553 aa
AA seq
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MKVDLKHIESMGADSQHTDIQADSKNTVSQSDYPILSKAQILERLLARDVERGYKSLKDL
PLPQALAHITEGAEIVANCIKSNQEVLVVGDYDADGVCASAIMVQFFRILGYANMRLIIP
NRFTDGYGVSAALLQKYANNAAVVISVDNGITAFCAAQWCKEAQIPLVITDHHTPTHQLP
EADVIIDPYLSECTFPQKSICGAVVAWYFCATLKQILDCDVNMSVFLPYLAIASVGDVMP
LVGINRLLVKKGIESLYTTSMPFARLLREKYKKLDAQTLGFYIVPLLNAPGRMASADVAL
AFLVSEDLDKAQSAYERLLNLNNERKKIQSEVLESAHKHLIEYDDFVVSYAQGWHEGVLG
IVASHLSREYQKSAFVFNEINNVLKGSGRSFGDANLIASITPLADKLLGFGGHSGAMGLS
VEKEKLRDFASSLCMVCEESEDKDSVLGKIESANIDRELLEIIEHFAPFGAGNPMPVLIC
EYMRIESIKPFGKVGVHFEYILRDTRTQTRLVCVEFFAPCMREVGQCGDVYCEIMRDDFT
LGVKLKMIEGRFV
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtagatttaaaacatatagaatctatgggcgcggattctcaacacacagatatt
caagcagattctaaaaatacagtatctcaaagtgattatcctattcttagcaaggcgcag
attttggagcggcttttagcgcgtgatgtggagagggggtataagtctctcaaagacttg
cccctgcctcaagccctagcgcatatcacagagggcgcggaaattgttgcaaattgtata
aaaagcaatcaagaagtgctcgtggttggggattatgacgctgatggcgtgtgtgcgagt
gcgataatggtgcaattctttagaatcttaggctatgcaaatatgcgactcattattccc
aatcgctttacagacggctatggtgtgagtgccgcgctcttgcaaaaatatgcaaataat
gctgccgtggtaataagcgtagataatggtattaccgcattttgtgccgcacaatggtgc
aaagaggcgcagattccgcttgtgattactgaccaccacacgcccacacaccaactgcca
gaagctgatgtaattatcgacccctatttgagcgaatgcacttttccacagaaatccatt
tgtggcgcggtggtagcttggtatttttgcgctactttgaagcagattcttgattgcgat
gtgaatatgagcgtgtttttgccctatctcgccatagcgagtgtgggcgatgtaatgccc
cttgttggcataaatcgtctgcttgttaaaaaaggtatagaatctctttataccacttca
atgccttttgcgcggcttttgcgagaaaaatacaagaaacttgacgcacagactttgggc
ttttatatcgtcccattgcttaatgcccccgggcgtatggcgagtgccgatgtagcttta
gcatttttagtcagtgaggatttagataaggcacaaagcgcgtatgagaggcttttaaac
cttaacaatgagcgcaaaaagattcaaagtgaggttttagaatccgcacacaagcatttg
atagaatatgatgattttgtggtgagctacgcgcaagggtggcacgaaggtgtgctgggt
attgtagcctcgcatttatcgagggagtatcaaaaaagtgcatttgtgtttaatgaaata
aataatgtgctcaagggtagtgggcgcagctttggtgatgcaaatcttatcgcttctatc
acgcctttggcggataaattactgggttttggcggacatagcggtgcaatggggctaagc
gtggagaaagagaaactgcgggattttgcctcatctctttgtatggtatgtgaggagagc
gaagataaagattctgtgcttggcaaaatagagagtgcgaatattgatagagagttgcta
gagataattgagcactttgcgccctttggtgcggggaatccaatgcctgttttgatatgc
gagtatatgcgtatagaatctattaagccttttggcaaggtgggagtgcattttgagtat
atcttgcgtgatacacgcacgcaaacgcgccttgtgtgcgtggagttttttgcgccttgt
atgcgtgaggtagggcaatgtggcgatgtgtattgtgagattatgcgagatgattttaca
ttgggagtgaaactaaagatgattgaggggagatttgtataa
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