Helicobacter typhlonius: BN2458_PEG2079
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Entry
BN2458_PEG2079 CDS
T04174
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hty
Helicobacter typhlonius
Pathway
hty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN2458_PEG2079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hty03019
]
BN2458_PEG2079
Messenger RNA biogenesis [BR:
hty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN2458_PEG2079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
PLCC
Motif
Other DBs
NCBI-ProteinID:
CUU40962
UniProt:
A0A099UB30
LinkDB
All DBs
Position
I:1879947..1882046
Genome browser
AA seq
699 aa
AA seq
DB search
MEEKNVTEQHNKPQSFGERFKKKSIEKQANDMTATGESREYHRESSHNTREGKKEYYHKP
KSQHPQDRHQHNGEQRQKPFEKRKWQGKNPMAQNQNKAQAEENINGVSEVRDVNESGNLG
LHKDLKKCVEANTRIQMQSLNPHNKLNLNTKASVRITPLGGLGEIGGNITVIETPDSAIV
IDVGMSFPNEDMHGVDILVPDFSYLFAIKDKIAGVIITHAHEDHIGAVPYLFKLLQFPIY
GTPLPLGMIGSKFDEHGLKKFRSFFKIVQKRKPIKIGAFEVEWINITHSVIDASALAIRT
EAGVIIHTGDFKIDHTPIDNLPTDLHRLAHYGEEGVMLLLSDSTNSHRSGTTPSEASVGP
TFESLFKQAEGRVIMSTFSSNIHRVYQAIHYGLKYNRKVAVIGRSMEKNLEIARELGYID
LPQNIFIEAHEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHIKIKPSDMVIISAKA
IPGNEGSVSVVLNFLLKAGAKVAYQDFSEIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEY
NHIAKHKQTAIACGVLEKNILLMEDGDQIEVNPNYIKKVRSVKNGKTYIDNQINRQIEND
VVLDRQALAQDGIVIISARINKERKILETKISSYGLVADKEDKGFEKEMNETLEFLVKNF
KQEGFNAKNLENEVHNLFKRHIFKKVKKYPTIVPMIYIV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaatgtaacagagcaacataataagccacaatcttttggggaaagattc
aaaaagaaatccatagagaaacaagcaaatgatatgactgccacaggagaatctagggaa
tatcatagagaatcaagccacaatacaagagaaggcaaaaaagaatattatcacaagcca
aaatcacagcacccacaagatagacatcaacataatggtgaacagagacaaaaaccattt
gaaaagcgcaaatggcagggcaaaaatcctatggcgcagaatcaaaacaaagcacaagca
gaggagaacataaacggcgttagtgaggtgcgtgatgtcaatgaaagtggcaatcttggg
ctacataaagatttaaaaaaatgtgtagaggcaaatacaaggattcaaatgcagagcctc
aatccccacaataaattgaatctcaacacaaaagcaagtgtgcgtatcacacctcttggt
gggctaggcgaaatcggcgggaatatcaccgttatcgaaactccagattcggcaatcgtt
attgatgtaggtatgagctttccaaatgaggatatgcacggcgtggatatcctcgtgccg
gattttagctatctttttgcgattaaggataaaatcgcaggggtaattatcactcacgcg
cacgaagaccacattggcgcggtgccttatcttttcaaacttttgcaatttccaatctat
ggcacaccactgccactgggtatgattggcagtaaatttgacgagcacgggctaaaaaaa
ttccgctcgttcttcaaaatcgtgcaaaaacgcaagccaattaaaattggtgcatttgag
gttgaatggattaatatcacgcactctgtaattgatgcttctgcccttgctatacgcaca
gaagcaggggtaattatccatactggtgattttaaaatcgaccacacgcctattgacaat
ctccccactgacttgcaccgcctcgcacactatggggaagagggcgtgatgcttttactt
agtgattctacaaactcacatcgcagcgggacaacgcctagtgaagcgagtgtgggacca
acttttgaatctctttttaaacaagcagaagggcgcgtgataatgagcactttttcatca
aatattcaccgcgtgtatcaggctatccactacgggctaaagtataatcgcaaagtcgct
gtaattggacgctctatggaaaagaatctcgaaattgcgcgcgagttaggctatattgac
ctaccacaaaatatttttatagaagcccacgaagtcgcaaaatatcctgacaatgaggtg
cttattgttaccacaggctcacaaggcgagacgatgagcgcactctatcgtatggcaaca
gacgagcaccgccatatcaaaatcaaacctagtgatatggtgattatttccgctaaggca
attccgggcaacgaaggctctgtatctgttgtgctaaattttctcctcaaagctggagca
aaagtcgcttatcaagactttagcgagattcatgtaagcggacacgctgcacaagaagaa
caaaagctaatgctacgactcattaagccaaaatttttcttgcccgtgcacggagaatac
aaccacatcgccaaacataaacaaacggcgatagcttgtggggtgcttgaaaaaaatatc
ctgcttatggaagatggcgaccaaattgaagtcaatccaaactatataaaaaaggtgcgc
agtgtcaaaaatggcaaaacttatattgacaatcaaatcaatcgccagattgaaaatgat
gttgtgcttgatagacaggctttggctcaagatggcattgtgattatctccgcacgtatc
aacaaagagcgcaagattctagaaacaaagatttctagctatggactcgtggcagacaaa
gaggacaaaggctttgaaaaagaaatgaatgagacgctagaatttcttgtaaaaaacttt
aaacaagagggattcaatgcaaaaaatctcgaaaacgaagtgcataatctcttcaagcga
catatttttaagaaagtcaaaaaatatccaacaatcgtgccaatgatttacatcgtgtag
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