Humibacter sp. BT305: DVJ78_07575
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Entry
DVJ78_07575 CDS
T05558
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hum
Humibacter sp. BT305
Brite
KEGG Orthology (KO) [BR:
hum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hum03032
]
DVJ78_07575 (topA)
03400 DNA repair and recombination proteins [BR:
hum03400
]
DVJ78_07575 (topA)
Enzymes [BR:
hum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DVJ78_07575 (topA)
DNA replication proteins [BR:
hum03032
]
Prokaryotic type
DNA Topoisomerases
DVJ78_07575 (topA)
DNA repair and recombination proteins [BR:
hum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DVJ78_07575 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AXH35282
LinkDB
All DBs
Position
1587099..1589864
Genome browser
AA seq
921 aa
AA seq
DB search
MASRKLVIVESPTKVKSIAQYLGEGFDVLASVGHIRDLIEPKNLPAELKKGSLGKFSVDV
ENGFEPYYVVSDAKKKTVSELKKALAGADELYLATDEDREGEAIAWHLLQVLKPKVPVKR
MVFHEITREAIEAARDNTRQIDDALVDAQETRRILDRLYGYEVSPVLWRKVGPGLSAGRV
QSAATRLVVDRERERLAFTSANYWDLTATLAAADAATAADTDSFQARISRLNGERVASGR
DFDESGALKGKAVLLSEPAALALKDALKAPGVDITVSSVESKPYTRRPAAPFTTSTLQQE
AARKLRFSARQTMSVAQSLYENGYITYMRTDSPSLSQQAIKAARSQAAALYGADTVPDKP
RLYAGKSKNAQEAHEAIRPAGEVFRTPSELSSSLRGNDFRLYDLIWKRTVASQMADAKGS
TATVTISAGPVEVAELGGTTTAEFTASGTVITFRGFLNAYEEGRDEERNASTEPAEAKLP
NLAEGQALAAREIEAAGHDTTPPPRYTEASLVKALDELGIGRPSTYASIISTIIDRGYVT
PRGQALVPSWTAFSVVRLLEDFFTELVDYDFTAALEADLDKIADGDEDRVDWLNGFYFGS
DDHPGLRRVIDNLGDIDARAVNSISITDDITLRIGKYGPYLEVVDPSGDLDAPPRRVNLP
QDLAPDELTPEKARELVDAPVVTDRVIGINPENGKQILAKDGRFGPYVTEADPEPETDAA
AAASVEPVAEEKPKRGAKKAPAAPKPRTASLFKSMDLATIDLDTALKLLDLPRTVGADPE
SGEPITAQNGRYGPYLKKGSDTRSLDSEDLIFEVDLDKALELFAQPKYGARRASSALKEF
AEDPVSGKPIKVKDGRFGPYVTDGTTNATIPRGEDVEDVDFERAVQLLADKRAKGPAKPK
GRAKSTTTSTRKTTTRSTSKK
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
ttggcatcgcgcaagctcgtgatcgtcgagtcgcccaccaaggtcaagtccatcgcccag
tacctcggcgagggcttcgacgtgctggcctcggtggggcacatccgcgatctcatcgag
ccgaagaaccttcccgccgagctcaagaagggctcgctcggaaagttctccgtcgacgtc
gagaacggcttcgagccctactacgtggtgagcgacgcgaagaagaagaccgtgtccgag
ctcaagaaggccctggcgggcgccgacgagctctacctcgccactgatgaggatcgcgag
ggcgaggccatcgcctggcacctgctccaggtgctgaagccgaaggtgccggtcaagcgc
atggtgttccacgagatcacccgcgaggcgatcgaggcggcgcgcgacaacacccgccag
atcgacgacgccctggtcgacgcccaggagacccggcgcatcctcgaccggctctacggc
tacgaggtgtcgcccgtgctctggcgcaaggtcggccccggtctctcggccggccgcgtg
cagtcggcggccacgcgactcgtggtcgaccgtgagcgcgagcgcctcgcgttcacctcc
gcgaactactgggacctcaccgccaccctcgcggcggccgacgctgccaccgcggccgac
accgactcgttccaggcgcgcatctcgcgcctcaacggggagcgtgtcgccagcggtcgc
gacttcgacgagtcgggtgcgctcaagggcaaggccgtgctcctcagcgagccggccgct
ctggccctgaaggatgcgctgaaggctcccggcgtcgacatcacggtgtcgtcggtcgag
tcgaagccctacacccgcaggccggctgcgccgttcaccacctcgacgctgcagcaggag
gcggcccgcaagctccgcttctccgcacggcagacgatgagcgtggcgcagtcgctctac
gagaacggctacatcacctacatgcgcaccgactcgccgtcgctctcgcagcaggcgatc
aaggcggcccgcagccaggcggccgcgctctacggcgccgacacggtgcccgacaagccg
cgcctgtacgccgggaagagcaagaacgcccaggaggcacacgaggccatccgtcccgcg
ggcgaggtgttccgcaccccgtccgagctctccagctccctgcgcggcaacgacttccgc
ctctacgacctcatctggaagcgcaccgtcgcctctcagatggccgacgccaagggctcg
accgcgaccgtgaccatctcggccggcccggtcgaggtcgccgagctcggcggcacgacc
acggcggagttcaccgcgtccgggacggtcatcaccttccgcggcttcctgaacgcctac
gaggagggccgcgacgaggagcggaacgcctcgaccgagccggccgaggccaagctgccg
aacctcgccgagggccaggcgctggccgctcgcgagatcgaggccgccggacacgacacg
accccgccgccgcgctacacggaggcgagcctcgtgaaggcgctggacgagctgggcatt
ggacgcccgtcgacctacgcgtcgatcatctcgaccatcatcgaccgcggctacgtcact
ccccgcggccaggcgctcgtcccgagctggaccgcgttctcggtcgtgcgcctcctggag
gacttcttcaccgagctggtcgactacgacttcaccgcggcgctcgaggcggacctcgac
aagatcgccgacggcgacgaggaccgggtcgactggctgaacggcttctacttcggcagc
gacgaccacccgggtctgcgccgcgtcatcgacaacctgggcgacatcgacgcccgggcg
gtcaactcgatctccatcaccgacgacatcaccctgaggatcggcaagtacggcccctac
ctcgaggtcgtcgacccctccggcgacctcgatgcgccgccgcggcgggtcaacctccct
caggacctcgcccccgacgagctcacgcccgagaaggcgcgcgagctggtcgacgcgccg
gtggtcaccgaccgggtgatcgggatcaaccccgagaacggcaagcagatcctcgccaag
gacggccgcttcggtccgtacgtcaccgaggccgatcccgagccggagaccgacgccgcc
gctgcggcgagcgtcgagccggtcgccgaggagaagcccaagcgcggggccaagaaggct
ccagccgctccgaagccgcggacggcgtcgctcttcaagtcgatggacctggcgacgatc
gacctcgacacggcgctcaagctgctcgacctcccgcgcacggtcggcgccgatcccgag
tcgggcgagccgatcaccgcgcagaacggccgctacggtccgtacctcaagaagggcagc
gacacccgctcgctcgactccgaggacctcatcttcgaggtcgacctcgacaaggcactc
gagctgttcgcccagccgaagtacggcgcccggcgtgcctcgagcgcgttgaaggagttc
gccgaggatccggtgagcggcaagccgatcaaggtgaaggacggccgcttcggtccgtac
gtcaccgacggcaccaccaacgccacgatcccccgcggcgaggacgtggaggacgtcgac
ttcgagcgggccgtgcagctcctcgccgacaagcgggcgaaggggccggcgaagcccaag
ggccgggcgaagtcgacgaccacgtcgacccggaagacgacgacccgatcgacctcgaag
aagtga
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