Humibacter sp. BT305: DVJ78_09970
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Entry
DVJ78_09970 CDS
T05558
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hum
Humibacter sp. BT305
Pathway
hum03420
Nucleotide excision repair
hum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVJ78_09970
03430 Mismatch repair
DVJ78_09970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hum03400
]
DVJ78_09970
Enzymes [BR:
hum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVJ78_09970
DNA repair and recombination proteins [BR:
hum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DVJ78_09970
MMR (mismatch excision repair)
Other MMR factors
DVJ78_09970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AXH35688
LinkDB
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Position
2122777..2124474
Genome browser
AA seq
565 aa
AA seq
DB search
MDPDALLAGLDEQQAEAARALLGPVSILAGAGTGKTRTITHRIAYGVASGVYPPNRVMAL
TFTSRAAAELRARLRPLGADRVAARTFHAAALSQLNYFWPQVAGGDAPRILEAKARLIAD
AATAVRARVDTAILRDAAAEIEWRKVSNLSLEEYESAAHARRSMPGSMSVDQMLELQRTY
ERMKDEQRRIDFEDVLLATAGMIETEPSVALQVREQYRFFVVDEYQDVSPLQEHLLRLWL
GDRDDLCVVGDASQTIYSFAGARSEYLLDFARRHPEATVVSLEQNYRSTTAVLDVANRLM
RGRPGALTLHAAAPDPGEPPTIDEYADDRAEANGVADRVAALVAEGVQPHDIAILFRVNA
QSPELEQSLADRGVSYQVRGGKRFFDQPDVARAVLELRAASVSVTGEPLFKSVSDVLRSR
GWSQEPPAAAGAVRERWDLLNALMRLAEEMPEGTTFRAFTDELMLRQSMQHEPTVRAVTL
ATLHSAKGLEWPHVFIVGAAEGLLPISHAGGLEAIDEERRLFYVGITRARMRLHLSWARQ
GTRRSADRSPSRFLAELGTRTADAG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtggatcccgacgcgctgctcgccggactcgacgagcagcaggccgaggccgcgcgcgcc
ctcctgggcccggtgagcatcctcgccggcgccgggacggggaagacgcgcaccatcacg
caccgcatcgcctacggcgtggccagcggcgtctatccgccgaatcgcgtcatggcgctg
accttcaccagtcgcgccgcggccgagctccgggcgaggctgcgtccgctcggcgccgat
cgcgtcgccgcccgcacgttccacgcggcggcgctgtcgcagctgaactacttctggccg
caggtcgcgggcggggacgccccgcggatcctggaggcgaaggcgcggctcatcgccgac
gccgcgaccgccgtgcgcgctcgcgtcgacacggcgatcctccgggacgccgccgccgag
atcgagtggcgcaaggtgtcgaacctcagcctcgaggagtacgagtcggcggcgcacgcg
agacggtcgatgccgggctcgatgtcggtggaccagatgctcgagctgcagcgcacctac
gagcgcatgaaggacgagcagcgccggatcgacttcgaggacgtcctgctcgccaccgcc
ggcatgatcgagacggagccctccgtcgccctgcaggtgcgcgagcagtaccggttcttc
gtcgtcgacgagtaccaggacgtctccccgctgcaggagcacctcctgcggctctggctc
ggcgaccgggacgacctctgcgtggtcggcgacgcgagccagacgatctactcgttcgcg
ggagcccgttcggagtacctgctcgacttcgcccgtcggcatccggaggcgaccgtcgtc
tccctcgagcagaactaccgctccaccaccgcggtgctcgacgtcgcgaaccggctcatg
cgcggacgtcccggtgcgctcaccctccatgccgccgcgcccgacccgggagagccgccg
accatcgacgagtacgccgacgacagggcggaggccaacggggtcgcggatcgtgtggcc
gcgctggtggcggagggcgtccagccgcacgacatcgccatcctgttccgggtcaacgcc
cagtcgccggagctcgagcagtcgctcgccgaccggggggtgagctaccaggtccgcggg
ggcaagcgcttcttcgaccagcccgacgtcgctcgtgccgtgctcgagctccgcgccgcg
tccgtctcggtgaccggggaacccctgttcaagtcggtgagcgacgtgctccgctcccgg
ggctggagccaggagcccccggcggcggcgggcgcagtgcgggagcgctgggatctgctg
aacgcgctcatgaggctggccgaggagatgcccgagggcaccacgttccgggcgttcacc
gacgagctgatgctgaggcagagcatgcagcacgagccgaccgtccgcgcggtcaccctg
gccacgctgcactcggccaagggtctcgagtggccgcacgtcttcatcgtgggcgccgcc
gagggactattgccgatcagccacgccggtggcctcgaggcgatcgacgaggagcgccgc
ctgttctacgtgggcatcacacgggcccggatgcgcctgcacctgtcgtgggcgcgccag
gggacgaggcggtcggcggaccggtctccgtcgcggttcctggcagagctcggcacgcgc
accgcggatgccggctga
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