Humibacter sp. BT305: DVJ78_10495
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Entry
DVJ78_10495 CDS
T05558
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hum
Humibacter sp. BT305
Pathway
hum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVJ78_10495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hum03019
]
DVJ78_10495
03400 DNA repair and recombination proteins [BR:
hum03400
]
DVJ78_10495
Enzymes [BR:
hum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVJ78_10495
Messenger RNA biogenesis [BR:
hum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVJ78_10495
DNA repair and recombination proteins [BR:
hum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DVJ78_10495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXH35773
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All DBs
Position
2239603..2241312
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AA seq
569 aa
AA seq
DB search
MNGCEGWVASAGHILGGTVLKVNGSSHSTDVRERAAEVARTVFGWPSLRPGQAEAVEAVV
EGQDLLAVMATGYGKSAIYQIAAHLLEGPAVVVSPLIALQADQVRHLAERTHDDEEAVAV
NSAQSASANRAAWESVASGAAEFVFLAPEQLAKEEVLERLEEARPGLVVVDEAHCVSAWG
HDFRPDYLRLGAAIERLGHPRVLALTATGSAPVRDEIVERLGMRSPRIIVGGFDRPNIRL
AVLRHEHDHEKEQAVLEQVVGLEQPGLLYVATRGDTERLADVLSERGLRAAAYHGGLKAG
ERREVHRRFSDGELDVAVATSAFGMGIDKADVRYVVHADITDSVDSYYQEVGRCGRDGEP
ATATLHYRQEDLGLRRFFAGGKADHARVRSVTSALSTGRPTPAGDLAESSGVSARALTGV
LNLLIEAELAREEADGFTLVRKVADTEAIRAVDEVVDRRTRIDESRLAMVRGFAETLRCR
RQYLLEYFGDAGTEPCGNCDTCESGSAYEHDDDDATSGFRVDERVEHPEWGEGRVMTVED
DRLTVFFESVGYKVLSRELVEEKGLLAPE
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaacggatgcgagggctgggtggcctccgcgggccacatactagggggtacggtcttg
aaagtgaatggctcctcccactcgaccgacgtccgcgaacgagccgccgaggtggcgagg
acggtgttcggctggccctcgctccggcccggacaggcggaggccgtcgaggcggtggtc
gagggtcaggacctcctcgcggtcatggcgacgggatacggcaagtccgccatctaccag
atcgctgcgcacctcctcgagggccccgctgtcgtggtgtcgccgctgatcgcgctccag
gccgaccaggtccgtcatctcgccgagcgcacgcacgacgacgaggaggccgtggccgtg
aactccgcgcagtccgcctcggcgaaccgcgcggcctgggagagcgtggcctcgggggcg
gcggagttcgtcttcctcgccccggagcagctcgcgaaggaggaggtcctcgaacggctg
gaggaggccaggcccggactcgtcgtggtggacgaggcgcactgcgtgtcggcctggggc
cacgacttccgcccggactacctgcggctcggtgccgccatcgagcggctgggccacccc
cgtgtcctcgccctgaccgccaccggatcggcgccggtccgcgacgagatcgtcgagcgt
ctcgggatgaggtctccccgcatcatcgtgggcggcttcgaccggccgaacatccggttg
gcggtgctgcggcacgagcacgaccacgagaaggagcaggcggtcctcgagcaggtcgtg
ggtctcgagcagccgggactgctctacgtcgcgacgcgcggcgacacggagcggctcgcc
gacgtgctgtcggagcgcgggctccgcgcggccgcataccacggcggcctcaaggcgggg
gagcggcgcgaggtgcaccggcgcttctccgacggggagctggacgtggccgtggcgacc
agcgccttcggcatgggcatcgacaaggccgacgtgcgctacgtcgtgcacgccgacatc
accgactcggtcgactcctactatcaggaggtcggccggtgcggtcgcgacggggagccg
gcgaccgcgacgctgcactaccgccaggaggatctgggactgcgccgcttcttcgccggt
gggaaggccgaccacgctcgggtccggtcggtgacctcggcgctctcgaccggcaggccg
acccccgccggcgacctcgcggagtcgagcggggtgtcggcacgcgcgctcacgggggtg
ctgaacctcctgatcgaggcggagctggcgcgcgaggaggcggacgggttcaccctggtc
cggaaggtcgccgacacggaggcgatccgtgccgtcgacgaggtggtggatcggcgcacg
cggatcgacgagtcgcggctggcgatggtccgcggcttcgccgagaccctccgctgccgg
cggcagtacctgctggagtacttcggcgacgccggcacggagccctgcggcaactgcgac
acctgcgagagcggatccgcctacgagcacgacgacgacgacgccacgagcggcttccgg
gtcgacgagcgggtcgagcaccctgagtggggcgagggccgcgtgatgaccgtggaggac
gaccggctgaccgtgttcttcgagtcggtcggctacaaggtgctctcgcgggagctggtc
gaggagaagggcctgctcgccccggagtga
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