Humibacter sp. BT305: DVJ78_10520
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Entry
DVJ78_10520 CDS
T05558
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
hum
Humibacter sp. BT305
Pathway
hum00300
Lysine biosynthesis
hum00470
D-Amino acid metabolism
hum01100
Metabolic pathways
hum01110
Biosynthesis of secondary metabolites
hum01120
Microbial metabolism in diverse environments
hum01230
Biosynthesis of amino acids
Module
hum_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hum00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DVJ78_10520 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
DVJ78_10520 (lysA)
Enzymes [BR:
hum01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
DVJ78_10520 (lysA)
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AXH35777
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Position
2244778..2246235
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AA seq
485 aa
AA seq
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MTASPLAPAWLEHPADPNHLPSRVWPRSASRDDRGALVVGGVPADTLAERFGTPLYVVDE
GEARARARQVLDAFGSAFEAVGTRAKVYYAGKAFLTGTVARWMSDEGLAIDACSGGELEV
ALRAGVEPARIGLHGNNKSLAEIDRAVEAGIGAIVIDSAIEIERIAAAAERRGRVQPVRL
RVNSGVHAHTHDFLATAHEDQKFGVRLDQAAEFVARIRSFDSLSFLGFHCHIGSQIFDSG
GFAESAARLLEAHAAALEGGPVPELNLGGGFGIAYTSADDPAPIDELARTIADAVAGECS
RLGVPVPVVAFEPGRSIIGTAGVTLYTVGTVKDVLVQVPGERPESPSSEHVRRYVSVDGG
MSDNARPALYGAEYSARIASRESPADAALVRVAGKHCESGDIVVDAEYLPGDVGPGDLLA
VPATGAYCWSLSSNYNHLGRPPVVAVSEGAATMIVRGETIDDLLARDLAFAPQTDQNDPT
EETDR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctccccgctcgctcctgcctggctcgagcatccggccgacccgaaccacctc
ccgtcccgcgtgtggccgcgttccgcgagccgcgacgaccggggagcgctcgtcgtcgga
ggtgtccccgccgacacgctcgccgaacgcttcggcactccgctgtacgtggtcgacgag
ggcgaggcgcgcgcccgcgcccggcaggtcctcgacgcgttcggctccgcgttcgaggcg
gtcggcactcgagcgaaggtgtactacgcgggcaaggcgttcctcaccggaacggtcgcg
cgctggatgtccgacgagggcctggccatcgacgcctgctccggcggggagctcgaggtc
gcgctgcgggcgggggtcgagccggcgaggatcgggctgcacggcaacaacaagtccctc
gcggagatcgatcgagcggtggaggccggcatcggcgccatcgtcatcgacagcgcgatc
gagatcgagcggatcgcggccgccgccgagcgccgcggccgcgtccagcccgtccggctt
cgggtgaacagcggagtccacgcgcacacgcacgacttcctcgccacggcgcacgaggac
cagaagttcggcgtgaggctcgatcaggccgccgagttcgtggcgcgcatccggtcgttc
gactcgctgtccttcctgggcttccactgccacatcggctcgcagatcttcgactccggc
gggttcgcggagtcggcggcgcggctcctcgaggcccacgcggcggcgctcgagggcggt
cctgtgcccgagctcaacctgggcggcggcttcggcatcgcgtacacgtccgccgacgac
cccgccccgatcgacgagctggcgcgcaccatcgccgacgcggtggccggcgagtgctcg
cgcctgggcgtccccgtgccggtcgtcgccttcgagcccggacgctcgatcatcggcacc
gccggcgtgacgctctacaccgtgggcacggtcaaggacgtcctggtgcaggtgccgggg
gagcgccccgagtcgccgtcctccgagcacgtgcggcggtacgtcagcgtggacggcggg
atgagcgacaacgccagacccgccctgtacggcgccgagtactcggcgaggatcgcctcg
cgggagtcccccgccgacgccgccctcgtgcgggtggcgggcaagcactgcgagagcggc
gacatcgtggtcgacgccgagtacctgccgggcgacgtgggccccggcgacctcctcgcc
gtgccggccaccggcgcctactgctggtcgctctcgagcaactacaaccatctcggccgc
ccgccggtggtggcggtgtccgagggcgccgcgacgatgatcgtccgcggcgagacgatc
gacgacctgctcgcgcgcgacctcgccttcgccccgcagaccgaccagaacgacccgacc
gaggagaccgaccgatga
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