KEGG   Humibacter sp. BT305: DVJ78_11750
Entry
DVJ78_11750       CDS       T05558                                 
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
hum  Humibacter sp. BT305
Pathway
hum03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DVJ78_11750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hum03400]
    DVJ78_11750
DNA repair and recombination proteins [BR:hum03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DVJ78_11750
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DVJ78_11750
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_21 AAA_29 AAA_16 nSTAND1 RsgA_GTPase AAA_25 AAA_23 DnaJ_CXXCXGXG HTH_IclR
Other DBs
NCBI-ProteinID: AXH35995
LinkDB
Position
2508709..2511600
AA seq 963 aa
MSITSVNAGQKLTVSGARVHNLQDVDIEIPRDSLVVFTGLSGSGKSSLAFDTIFAEGQRR
YVESLSAYARQFLGQVDRPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIFDYMRLLW
ARIGIPHCPICGERIAAQTVQQIADQLMELPERTRFMVLSPVVSQKKGEFVDLFKELSGQ
GYSRAIVDGEMIQLTEPPKLKKQYKHDISVVIDRLVAGPDILTRLTDSLETALRLTDGIV
QVNYVDENGPEAWQTFSEKLSCPNQHPIQLTEIEPRTFSFNAPFGACPECSGLGTRMSVD
QDLLLGDEDLSIQDGVIIPWTTQGKGLFQYYEKLLAGLARDLDFSLKTPWKDLTPQVREA
ILRGNDFEVKVRWKNRWGREMSYSSGFEGVMPYIERQFAQAESDSQRARWGEYLREVPCP
VCDGKRLKPEVLAVTVAGASIADVTQYSLTDAQDFMAELTLNDREAMIAAQVLREIRARL
DFLIEVGLGYLDLARSAGSLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRL
IDTLVKLKNLGNTLIVVEHDEDTIRTADWIVDIGPGAGVNGGTVVHSGGYEALLRNTKSL
TGDYLAGRREIATPTKRRKIDKKRMISVVDAQANNLKSVTADFPLGVLTAVTGVSGSGKS
SLVNDILYRVLANRLNGARKLPGKHKRVTGLDQLDKVVHVDQAPIGRTPRSNPATYTGVF
DRIRNLFADTAEAKARGYLAGRFSFNVKGGRCEACAGDGTIKIEMNFLPDVYVACEVCGG
ARYNRDTLAVHYKGKNIAEVLDMPISEAAEFFEPISAIHRYLKTLVEVGLGYVRLGQSAT
TLSGGEAQRVKLATELQRRSNGRSVYVLDEPTTGLHFEDVRKLLQVLGGLTDKGNTVIVI
EHNLDVIKSADWIIDMGPEGGSGGGTIVAVGTPEQVAKNPASHTGMFLDEILNGDPQQAK
RAS
NT seq 2892 nt   +upstreamnt  +downstreamnt
gtgtcgattacgagcgtgaacgcaggccagaagctcaccgtcagcggtgcccgggtgcac
aacctccaggatgtcgacatcgagatccctcgcgactccctcgtcgtgttcacgggcctc
tccgggtcgggcaagtcgagcctggcgttcgacacgatcttcgccgaggggcagcgtcgc
tacgtcgagagcctgtcggcgtacgcgcgtcagttcctcggccaggtcgaccggccggac
gtcgacttcatcgagggcctgagcccggcggtgagcatcgaccagaagtcgacgaaccgc
aacccgcggtcgacggtcggcacgatcaccgagatcttcgactacatgcgtctgctctgg
gcgcgcatcgggatcccgcactgccccatctgcggtgagcgcatcgccgcgcagacggtg
cagcagatcgccgaccagctcatggagctgcccgagcgcacccgcttcatggtgctgagc
cccgtggtgagccagaagaagggcgagttcgtcgacctcttcaaggagctgtccggtcag
ggctattcgcgcgccatcgtcgacggcgagatgatccagctcaccgagccgccgaagctc
aagaagcagtacaagcacgacatctcggtcgtcatcgaccgcctggtggccggccccgac
atcctcacccgcctcaccgactcgctcgagacggcgctgcgcctcaccgacggcatcgtg
caggtcaactacgtcgacgagaacggccctgaggcgtggcagaccttctccgagaagctg
agctgccccaaccagcacccgatccagctcaccgagatcgagccgcgcaccttctcgttc
aacgcgcccttcggcgcctgccccgagtgctccgggctcggcacgcgcatgtccgtcgac
caggacctcctcctcggcgacgaggacctcagcatccaggacggcgtcatcatcccctgg
accacccagggcaagggcctgttccagtactacgagaagctgctcgccggcctcgcccgc
gacctcgacttctcgcttaagaccccgtggaaggacctcacgccccaggtacgcgaggcg
atcctccgcggcaacgacttcgaggtgaaggtccgctggaagaaccggtggggccgcgag
atgagctactcctcgggcttcgagggcgtcatgccctacatcgagcgtcagttcgcgcag
gccgagtccgactcgcagcgggctcgctggggcgagtacctccgcgaggtgccatgcccg
gtctgcgacggcaagcgcctcaagcccgaggtcctcgcggtcaccgtcgccggcgcgagc
atcgccgacgtcacgcagtactcgctgaccgacgcccaggacttcatggccgagctgacg
ctgaacgaccgcgaggccatgatcgcggcgcaggtgctccgcgagatccgcgcccgactc
gacttcctcatcgaggtcggtctcggctacctcgacctggcccgcagcgccggcagtctc
tccggcggcgaggcgcagcgcatccgtctggccacccagatcggatcgggcctcaccggc
gtgctctacgtgctcgacgagccgagcatcggcctccaccagcgcgacaaccggcgcctc
atcgacacgctcgtcaagctcaagaacctcggcaacacgctgatcgtcgtcgagcacgac
gaggacaccatccgcaccgccgactggatcgtcgacatcggccccggcgcgggcgtcaac
ggcggcacggtcgtgcactcgggcggatacgaggcactcctccgcaacacgaagtcgctc
accggcgactacctcgcgggtcgccgagagatcgccaccccaacgaagcgccgcaagatc
gacaagaagcgcatgatctcggtcgtggacgcgcaggccaacaacctcaagagcgtcacg
gccgactttccgctcggtgtgctcaccgcggtcacgggcgtgagcggatcgggcaagtcc
agcctcgtgaacgacatcctctaccgggtgctcgccaaccggctgaacggcgcccgcaag
ctcccgggcaagcacaagcgcgtcaccggccttgaccagctcgacaaggtcgtgcacgtc
gaccaggcgcccatcggccgcaccccgcggtcgaacccggcgacctacacgggcgtcttc
gaccgcatccgcaacctcttcgccgacacggccgaggcgaaggcgcgcggctacctcgcc
gggcggttcagcttcaacgtcaagggcggccgctgcgaggcgtgcgcgggcgacggcacg
atcaagatcgagatgaacttcctgcccgacgtgtacgtcgcgtgcgaggtctgcggcggt
gcgcgctacaaccgcgacaccctcgcggtgcactacaagggcaagaacatcgccgaggtg
ctcgacatgccgatcagcgaggcggccgagttcttcgagccgatcagcgcgatccaccgc
tacctcaagacgctcgtcgaggtgggcctcggctacgtccgcctggggcagagcgccacc
acgctctccggtggcgaggcgcagcgcgtgaagctcgccaccgagctgcagcgccgctcc
aacggtcgcagcgtgtacgtgctcgacgagccgacgacgggcctccacttcgaggatgtg
cggaagctcctgcaggtgctgggcggcctcaccgacaagggcaacacggtcatcgtcatc
gagcacaacctcgacgtcatcaagagcgccgactggatcatcgacatgggccccgagggc
ggctccgggggcggcacgatcgtcgccgtcggcaccccggagcaggtcgcgaagaatccc
gcgagccacaccgggatgttcctcgacgagatcctgaacggagacccgcagcaggcgaag
cgagcatcctga

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