Humibacter sp. BT305: DVJ78_15020
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Entry
DVJ78_15020 CDS
T05558
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hum
Humibacter sp. BT305
Brite
KEGG Orthology (KO) [BR:
hum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hum03019
]
DVJ78_15020 (hrpA)
Enzymes [BR:
hum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DVJ78_15020 (hrpA)
Messenger RNA biogenesis [BR:
hum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DVJ78_15020 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_22
AAA_19
HA2_C
AAA_30
nSTAND3
NACHT
nSTAND_NTPase5
T2SSE
WHD_HA2
ResIII
SLFN-g3_helicase
PhoH
TsaE
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AXH36551
LinkDB
All DBs
Position
3179534..3183451
Genome browser
AA seq
1305 aa
AA seq
DB search
MSDASTLPRIVFPPELPVSQKKDEIARAIAENQVVIVAGETGSGKTTQLPKICLELGREH
IGHTQPRRLAARTIAERIAEELGQEVGGLVGYQVRFTDRASADTRIKLMTDGILLNEMNH
DRLLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPQRPDLKVIITSATIDPESFARHFADA
EGTPAPIVEVSGRTFPVEIRYRPLSPDDGDDTGPGSDTDPGEDADEETDVDAPRLSGRAA
KRRTADAGGPAQDRDLFDAIGDALDELAREAPGDVLVFLSGENEIRDAEEALRGRLTAQG
GAAGRTELLPLYGRLSAADQHRVFERSSTPGVSRRVVLATNVAETSLTVPGIRYVIDAGT
ARISRYSVRAKVQRLPIEPISQASARQRSGRSGRTSPGIAIRLYSEADFDRRPEYTDPEI
LRTGLAAVILQMISLRLGDIQAFPFLTPPDSRGVKDGLDLLAELGAISPGKPGSDGPRLT
RVGRDLARLPIEPRFARMVVESRRTGNTREILAIVAGLTIQDVRERPLERRQRADELHGR
FTDPTSDFLSLLNLWNHLEQKQAELSSSAFRRMCKAEFINYLRVREWQDLYRQLRRLAKP
LSLEIGEPRVDPDGIHRAILSGLLSHIGLRDLEKRDYLGARQTRFSIFPGSALAKKQPAA
VMSAELVETSRLFARMNAAIDPAWAEPLARDLLKRTYSEPHWEKKQGAAVAYERVTLYGV
PIIPRRRVQFARIDPAYARELFLRHALVDGEWDSQQAFDRANRAFRKQLEQLEERSRRRD
IVTGDEAVFDFYDARIPRDVATVRDFEGWWRKARADDPDLLTMTIENLLPEGAPEVDEEE
YPTSWRQGDQRLALAYRFEPGARDDGVTATVPLALLPRLRQSAFEAQVPGLRRDLVIALI
KSLPKRLRVRFVPATDWAARLLETLEAEARGSGADVSQADFLELLAGAMTRLGHERVTAA
DFDRGRIPEHLRVTFRVVDDRGRTIGEGKDLEALQERFQDRARSSVAKVATAARRDPIER
TGLTRWDVGHLPDHVDTKGQGGVVRAYPALVDEGSSVGVRLLATPADQARETPAGVRRLL
VLAVPSPASYVKEHLTQNERLLLATAPYPSVQALLDDAMLACADDVLRRMHPDGVVRTAG
DFEAVRDELSRSVLALLDDAVGTIVRILEAWRRTERALKQVTSMSLLSALGDAREQVAAL
LPKGFVSLTGLARLRHLVRYLDAVTYRLERLPDNPGRDRAWQNEVETAVARLRDAGGSIP
AAPSAPAHLVRARWLIEELRVSLFAQQLGTAEPVSLQRIQKALAG
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgcctcgaccctcccccgcatcgtcttccctcccgagctgcccgtcagccag
aagaaggacgagatcgcgcgcgcgatcgccgagaaccaggtcgtcatcgtcgccggcgag
accggctcgggcaagacgacgcagctgccgaagatctgcctcgagctcggccgcgagcac
atcggtcacacgcagccgcgccggctcgcggcgcgcaccatcgcggagcgcatcgccgag
gagctcggccaggaggtcggcggactcgtcggctatcaggtgcgcttcaccgaccgcgcg
tcggccgacacccgcatcaagctgatgaccgacggcatcctcctcaacgagatgaaccac
gatcggctgctcagccgctacgacacgatcatcatcgacgaggcgcacgaacgcagcctc
aacatcgacttcctcctcgggtatctcaagcagctgctgccccagcgccccgacctcaag
gtcatcatcacgagcgccacgatcgatcccgagagcttcgcgaggcacttcgcggatgcg
gagggcactccagcgccgatagtcgaggtgtcgggccgcaccttcccggtggagatccgg
taccggccgctctcgcccgacgacggcgacgacacgggcccgggcagcgacacggacccg
ggcgaggacgcggacgaggagacggacgtcgacgccccgcgcctgagcggtcgtgccgcg
aagcggaggaccgcggacgccggcggcccggcccaggatcgcgacctgttcgacgcgatc
ggcgacgccctcgacgagctcgcccgggaggcgccgggcgacgtgctcgtgttcctctcg
ggcgagaacgagatccgcgacgcggaggaggccctccgcggcaggctgacggcgcagggc
ggcgccgccgggcgcaccgagctgctccccctgtacggccggctgagcgccgccgaccag
caccgcgtcttcgagcgcagcagcacgcccggcgtcagccgtcgtgtggtgctcgccacg
aacgtcgccgagaccagtctcaccgtgccgggcatccgctacgtgatcgacgccgggacc
gcgcgcatcagccggtacagcgtccgcgcgaaggtgcagcgccttccgatcgagcccatc
tcgcaggcgtccgcccgccagcgttccggccgctcgggccggacgagcccgggcatcgcc
atccgcctctactcggaggccgacttcgaccggcggccggagtacaccgatcccgagatc
ctccgcaccggcctcgccgccgtcatcctgcagatgatctcactccgcctgggcgacatc
caggccttccccttcctcaccccgcccgactcccgcggtgtgaaggacggactcgacctg
ctcgccgagctcggcgcgatctcgccaggcaagcccgggtccgacggcccgcggctcacc
cgggtggggcgggacctcgcccgcctcccgatcgagcctcggttcgcccgcatggtcgtc
gagtcgcggcgcaccgggaacacccgggagatcctcgcgatcgtcgccggtctcaccatc
caggacgtccgcgagcgacccctcgagcggcgtcagcgcgccgatgagttgcacgggcgg
ttcaccgacccgacgagcgacttcctgtcgctgctgaacctctggaaccatctcgagcag
aagcaggccgagctgtcctcgagcgcgttccggcggatgtgcaaggccgagttcatcaac
tacctccgggtccgcgagtggcaggacctgtaccggcagcttcgccgtctggcgaagccg
ctgagcctcgagatcggcgagccgcgggtggaccccgacggcatccatcgcgccatcctt
agcgggctgctgagccacatcggtctgcgcgacctcgagaagcgcgactacctcggcgcc
cggcagacgcggttctcgatcttcccgggctcggcgctggcgaagaagcagcccgccgcg
gtgatgagtgccgagctggtcgagacgagcaggctgttcgcgcgcatgaacgcggcgatc
gaccccgcgtgggcggagcccctggcgcgcgacctcctgaagcgcacctactccgagccg
cactgggagaagaagcagggcgccgcggtggcgtacgagcgggtcaccctctacggggtg
ccgatcatcccgcgtcgccgtgtccagttcgcgcgcatcgaccccgcgtacgcccgcgag
ctcttcctccgtcacgccctcgtcgacggcgagtgggactcgcagcaggcgttcgaccgg
gccaaccgggccttccggaagcagctggagcagctcgaggagcgcagccgacgtcgcgac
atcgtcaccggcgacgaggccgtcttcgacttctacgacgcccggatcccccgcgacgtc
gcgaccgtgcgcgacttcgagggctggtggcgcaaggcccgggccgacgatcccgacctc
ctgacgatgacgatcgagaacctcctccccgagggggcgccggaggtcgacgaggaggag
tatccgaccagctggcgtcagggcgaccagcggctcgccctcgcctaccggttcgaacca
ggcgcccgcgacgacggggtcaccgcgaccgtgccgctcgccctgctgccacggctccgt
cagtccgcgttcgaggcgcaggtgccgggtctccgacgcgacctggtcatcgcgctcatc
aagtcgctgccgaagcggctccgggtgcgtttcgtccccgccaccgactgggcggcgcgc
ctcctcgagaccctcgaggcggaggcccgcgggtccggcgccgacgtgtcgcaggccgac
ttcctcgagctgctggccggcgccatgacccgcctcggtcacgagcgggtcacggccgcg
gacttcgaccgcggccgcatccccgagcacctccgcgtcacgttccgcgtcgtagacgat
cgcgggcggacaatcggcgaggggaaggacctcgaggcgctgcaggagcggttccaggac
cgcgcccggtcgagtgtggccaaggtcgccaccgctgcccgccgcgatccgatcgagcgc
accggcctgacccgctgggacgtcggccacctccccgatcatgtcgacacgaaggggcag
ggcggcgtggtccgcgcctatccggcgctcgtcgacgagggctcgagcgtcggcgtccgc
ctgctcgcgaccccggccgaccaggcccgcgagacgcccgccggcgtgcggcgcctgctc
gtgctcgcggtgccctcccccgcgagttacgtcaaggagcacctgacgcagaacgagcgg
ctcctgctcgcgaccgccccctacccgagcgtgcaggcgctgctcgacgacgcgatgctc
gcctgcgccgacgacgtgctccggcggatgcaccccgatggcgtcgtgcgcacggcggga
gacttcgaggcggtgcgcgacgagctctcgcggtccgtcctcgcgctcctcgacgacgcg
gtgggcacgatcgtgcgcatcctggaggcctggcggcgcacggagcgagcgctcaagcag
gtgacgagcatgtcgctgctgtcggcgctgggcgatgcgcgcgagcaggtcgctgcgctc
ctgccgaaggggttcgtgtcgctcaccggactcgcgcggctccggcatctcgtgcgctac
ctcgacgcggtgacctaccgcctcgagcgactccccgacaatcccggtcgcgaccgcgcc
tggcagaacgaggtcgagaccgccgtggcccgactgcgggacgccggcggcagcatcccc
gcggctccgtcggcgcccgcgcacctcgtgcgcgctcggtggctgatcgaggagctgcgg
gtcagcctgttcgcccagcagctgggcaccgccgagccggtgtccctgcagcgcatccag
aaggcgctcgccggctga
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