Humibacter sp. BT305: DVJ78_16290
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Entry
DVJ78_16290 CDS
T05558
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hum
Humibacter sp. BT305
Pathway
hum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DVJ78_16290 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hum03021
]
DVJ78_16290 (rpoC)
03400 DNA repair and recombination proteins [BR:
hum03400
]
DVJ78_16290 (rpoC)
Enzymes [BR:
hum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DVJ78_16290 (rpoC)
Transcription machinery [BR:
hum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DVJ78_16290 (rpoC)
DNA repair and recombination proteins [BR:
hum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DVJ78_16290 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF1690
Motif
Other DBs
NCBI-ProteinID:
AXH36764
LinkDB
All DBs
Position
complement(3417894..3421772)
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRKWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIISVDEDGRHQDMPGLENELRLEIKTLSDQRDARIADRLARLEAD
LAELENEGAKADQKRRVKDGAEKEMAQSRKAYDDQISQLERVWEDFRNLKVGELKPEDAV
FHELQDRYGMYFEAYMGAEAIKKRLEAFDLTTEAENLRLQISEGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKQGAEGEGR
AFTSVSEAILAKDQGALDLNAVVKIRMSDVHFAEGAGPEGYVDGPVLVETTLGRALFNEA
LPVDYPYVEAVADKGKLSAIVNDLAERYPRTEVAASLDRIKDAGFYWATRSGVTVALSDI
LTPPTKRDIIANYEKQAAKVQGQFEKGLTTDLERRQELIQIWTKATDEVAAAMRANFPED
NTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLTVAEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSRGLDLPIAVEEAPGVWVRDANV
ENSVYARSLAADAVNEQGEVVAEAGEDVGDVLIDKLVAAGVRNIKVRSVLTCESAVGVCA
ACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQEL
FEARTPKGASPIVEAAGRITIEDTDRSRKVILTPDNGDEPVAYPVLKRATLLVEDGQHVE
LGQQLIVGTLDPKEVLRVKGVREVQKHLVDGVQGVYRSQGVPIHDKHIEVIVRQMLRKVT
VVEHGDTDLLPGELVDRSRYTEVNRGALAEGKRPASARQEVMGITKASLATESWLSAASF
QETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLPKYRNVSVEATEEAKAERYPNR
IFSDDSVFSEADLSFVDFDSFSSDDYTPGTYN
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgttacaaccttcgatgagctgcgcatcggcctcgccacggccgatgacatc
cgcaagtggtcctacggtgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
cccgagaaggacggtctgttcggtgagcagatcttcgggcccagccgtgactgggagtgc
tcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtgtgtgagcgatgcggtgtc
gaggtcaccaagtcctcggtccgccgtgagcgcatgggccacatcgagctcgccgcgccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctcgggtacctcctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcatctcggtggac
gaggacggccgtcaccaggacatgcccggtctcgagaacgagctccgcctcgagatcaag
accctgtccgaccagcgcgacgcccgcatcgccgaccgtctcgcgcgcctcgaggccgac
ctcgccgagctcgagaacgagggcgcgaaggccgaccagaagcgtcgcgtgaaggacggc
gccgagaaggagatggcgcagagccgcaaggcctacgacgaccagatctcccagctcgag
cgtgtgtgggaggacttccgcaacctcaaggtcggcgagctcaagccggaggacgccgtc
ttccacgagctccaggaccgctacgggatgtacttcgaggcctacatgggcgccgaggcg
atcaagaagcgcctcgaggccttcgacctcaccaccgaggcggagaacctgcgcctgcag
atctccgagggcaagggtcagaagaagatccgcgcgatcaagcgactccgcgtcgtatcg
tcgttcctcgccaccggcaactcgccggcggcgatggtcctcgatgtcgtgccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggcggtcgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctccgtcgactgctcgacctc
ggcgcccctgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcc
ctgttcgacaacggccgccgcggtcgtcccgtcaccggtaccggcaaccgcgccctgaag
tccctcagcgacatgctgaagggaaagcagggtcgcttccgccagaacctgctgggcaag
cgcgtcgactactcgggccgctcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatcaagcgcctg
atcgacctcagccacgcgcagaacatcaaggccgcgaagcgcatggtcgagcgcagccgt
ccccaggtgtgggacgtgctggaggagatcatccgcgagcgtcccgtgctgctcaaccgc
gcgccgacgctccaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctccacccgctcgtctgcgcggcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctgtcggtcgaggcccaggccgaggcccgcatcctgatgctg
gcgtcgaacaacatcctgaagccctccgacggccgtccggtgaccctgccctcgcaggac
atgatcatcggtctgcaccacctgaccacggtcaagcagggtgccgagggcgagggccgt
gcgttcacgtcggtctccgaggcgatcctggccaaggaccagggcgcgctcgacctcaac
gcggtcgtcaagatccgcatgagcgacgtgcacttcgccgagggcgccgggcccgagggc
tacgtcgacgggcccgtgctcgtcgagaccaccctcggtcgcgcgctgttcaacgaggcg
ctgccggtcgactacccctacgtggaggccgtcgccgacaagggcaagctgtccgcgatc
gtgaacgacctcgccgagcgctacccgcgcacggaggtcgccgcgtcgctcgaccgcatc
aaggacgccggcttctactgggccacccgctcgggtgtcaccgtggcgctgtccgacatc
ctcacgccgccgacgaagcgcgacatcatcgcgaactacgagaagcaggccgccaaggtc
cagggccagttcgagaagggtctgacgaccgacctcgagcgccgccaggagctcatccag
atctggacgaaggcgaccgacgaggtggccgcagccatgcgcgccaacttccccgaggac
aacaccatcaaccgcatggtgacctccggtgctcgtggtaactggctgcaggtgcgcaac
atcgccggcatgcgaggcctggtgaacaacccgaagggtgagatcatccctcgcccgatc
atctcgtcctaccgcgagggcctgaccgtggcggagtacttcatcgccacgcacggtgcc
cgcaagggtctggccgacaccgcgctccgtaccgccgactccggctacctcacccgtcgt
ctggtcgacgtctcgcaggatgtcatcatccgcgaggacgactgcggcaccagccgtggt
ctcgacctcccgatcgccgtggaggaggctcccggcgtctgggtccgcgacgcgaacgtc
gagaactcggtctacgcccggtcgctggccgcggatgcggtcaacgagcagggcgaggtc
gtcgccgaggccggcgaggacgtgggcgacgtgctcatcgacaagctggtcgcggcgggc
gtgcgcaacatcaaggtgcgctcggtcctgacctgcgagtcggctgtcggcgtctgcgcg
gcctgctacggccgttcgctggccaccggcaagctcgtcgacatcggcgaggcggtcggc
atcatcgccgcccagtcgatcggtgagcccggaacgcagctcacgatgcgcaccttccac
accggtggttcggcgtcggcagacgacatcacgcagggtcttccccgcgtgcaggagctg
ttcgaggcccgcaccccgaagggcgcgtcgccgatcgtggaggccgccggccgcatcacg
atcgaggacaccgaccgctcgcgcaaggtgatcctcacgcccgacaacggtgacgagccc
gtcgcctacccggtgctgaagcgtgcgaccctcctcgtcgaggacggccagcacgtcgag
ctcgggcagcagctcatcgtcggcacgctcgaccccaaggaggtcctccgggtcaagggc
gtccgcgaggtgcagaagcacctcgtcgacggtgtgcagggtgtctaccgctcgcagggt
gtgccgatccacgacaagcacatcgaggtcatcgtccgccagatgctgcgcaaggtcacc
gtcgtcgagcacggcgacaccgacctgcttccgggtgagctcgtcgaccggtcgcgctac
accgaggtcaaccgcggtgccctcgccgagggcaagcgccccgcctcggcccgtcaggag
gtcatgggaatcaccaaggcctcgctggcgaccgagtcgtggctgtcggccgcgtccttc
caggagaccacccgcgtcctgacgcaggcggccatggagggcaagtccgacccgctggtg
ggcctgaaggagaacgtgatcatcggaaagctgatccccgcggggaccggcctgccgaag
taccgcaacgtgtccgtcgaggccaccgaggaggcgaaggcggagcgctacccgaaccgc
atcttctccgacgactcggtgttctccgaggcggatctgtcgttcgtcgacttcgacagc
ttcagctccgacgactacaccccgggcacctacaactag
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