Halorhabdus utahensis: Huta_1132
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Entry
Huta_1132 CDS
T00971
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hut
Halorhabdus utahensis
Brite
KEGG Orthology (KO) [BR:
hut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hut03016
]
Huta_1132
Enzymes [BR:
hut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Huta_1132
Transfer RNA biogenesis [BR:
hut03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Huta_1132
Prokaryotic type
tRNA splicing ligases
Huta_1132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACV11308
UniProt:
C7NMA0
LinkDB
All DBs
Position
complement(1107305..1108753)
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AA seq
482 aa
AA seq
DB search
MPIEITGEHTTAEFLVDEESLIEDNCLDQVRTLVDHPAFTEPIRMMPDAHVGAGAPIGFT
MPLPDRVVPNIVGVDVGCGMVATNLGEDLPLDGPERERRVREAVPMGRAVHDYDDAPHLV
EEFPFEGANDVFERFDAAYRERFGRPIDPLEFDFEGYDGAYFKALCRRVLAGSRQGMGYV
IRGAGTLGGGNHFVEFAKARDSGEYWLVIHSGSRYLGKSVAEYWQEKATQYREADAIREA
IPEEYAEYLKFDPETVSDADLFAWVTGGKGKSHVRKDAIRADFDGEEVDEVFRALSRPQE
ALEDRNEDLDWLEGQEAHGYFVDMLFAQQYARWNRELMSDAICAALDLEPVDRFQSIHNY
VDFRDLTIRKGATPARDGQRLVIPFNMAEGSLLARGKGNRRSHQTAPHGAGRTMGRREAH
ETLNVEDFETAMAEVYSESVGESTLDEAPMAYKSVEAIVEAIEPTAEIIDRLDVVHNLKA
TE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcgaaatcacaggcgaacacacgaccgccgaatttctcgtcgacgaggagtcg
ctcatcgaggacaactgtctcgaccaggtccggacgctcgttgaccaccctgcattcacc
gagccgatccggatgatgcccgacgcccacgtcggcgcgggcgcacccatcgggttcacc
atgcccttgccggaccgggtcgtgcccaacatcgtcggcgtcgacgtcggctgtggtatg
gtcgcgacgaacctcggcgaggacctaccacttgacggcccggaacgcgagcggcgggtg
cgcgaggccgtaccgatggggcgggccgtccacgactacgacgacgcgccgcatctcgtt
gaggaattcccgttcgagggggcgaacgacgtgttcgaacgctttgacgccgcctaccgc
gagcgcttcggccgcccgatcgacccgctcgagttcgacttcgagggctacgatggggcg
tacttcaaggcgctgtgccggcgcgtgctcgctggatcccggcagggcatgggttacgtg
atccgcggtgcgggcacgctcggcggtggcaaccacttcgtcgagttcgcgaaggctcgc
gattccggtgagtactggctggtgatccacagcggctcgcggtatctcggcaagtccgtc
gccgagtactggcaggagaaggcgacgcagtatcgcgaggccgacgcgatccgcgaggcg
atacccgaggaatacgccgagtatctgaagttcgaccccgagacggtcagcgacgcggac
ctcttcgcgtgggtcaccggcgggaagggcaaatcgcacgtccgcaaagacgcgatccgg
gcggacttcgacggcgaggaggtcgacgaggtcttccgggcgctgtctcggccgcaggaa
gctctcgaagatcgcaacgaggatctcgactggctggaaggtcaggaggcccacggctac
ttcgtcgacatgctgttcgcccagcagtacgcccgctggaaccgggagctgatgagcgac
gctatctgtgcggcgctggatctcgagcctgtcgatcgattccagtcgatccacaactac
gtcgacttccgcgacctgactatccgaaagggcgcgacgccggcccgggacggacagcgc
ctcgtcatccccttcaacatggccgaaggctcgctactggcacgtgggaaggggaatcga
cggtcccaccagacggctccccacggggccggccggacgatggggcgtcgcgaggctcac
gagacactcaacgtcgaggacttcgagaccgcgatggcggaagtgtattcggagtccgtt
ggtgagtcgacgctcgacgaggccccgatggcctacaagtctgtggaggcgatcgtcgag
gcgatcgaaccgactgcggagataatcgatcggctcgacgtcgttcacaatctgaaggcg
acggagtag
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integrated database retrieval system
