Halorhabdus utahensis: Huta_2758
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Entry
Huta_2758 CDS
T00971
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hut
Halorhabdus utahensis
Brite
KEGG Orthology (KO) [BR:
hut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hut03016
]
Huta_2758
Enzymes [BR:
hut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Huta_2758
Transfer RNA biogenesis [BR:
hut03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Huta_2758
Prokaryotic type
tRNA splicing ligases
Huta_2758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACV12919
UniProt:
C7NR06
LinkDB
All DBs
Position
2830246..2831706
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AA seq
486 aa
AA seq
DB search
MTTYDAGEFTLEKVREYVWEMPQEGDMRVPARVLASEELLDEISDDLSLQQLKNTTHLPG
IQQYALAMPDAHQGYGFPVGGVAGIDAETGVISPGAVGYDINCGVRMLKTNLTYSDIQGR
EEQLVDALFEAIPSGLGGGGVVQTDVDTLEEVLTRGVEWALDEGYAVEDDLAHCEDEGVR
PGADPDAVSKKAKDRGRQQLGSLGSGNHFLEVQRVTDVYREDVAESFGLSEDQIVVLIHC
GSRGLGHQVCTDYLRDIEQAHQGLLEQLPDKELAAAPAGSHLAEAYYGAMNAAINFAWVN
RQLIMHRTREVFADVFDRDWRDMEMELLYDVAHNIAKKETHTIEGQDRELFVHRKGATRA
FPAGHPEIPAAYRDVGQPVIIPGSMGAGSYVLRGGEHSMAETFGSTAHGAGRLMSRTEAK
NTYWGEDVQDDLRDQEQIYVKAESGATVAEEAPGVYKDVDEVVRISDELGIGDRVARTFP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgactacctacgacgccggtgagttcaccctggagaaggtacgggagtacgtctgggag
atgccacaggaaggcgacatgcgcgttcccgcgcgggtcctcgccagcgaggaactcctc
gacgagatcagcgacgatctctccttgcagcaactcaagaacactacccacctccccggg
atccagcagtacgccctggcgatgcccgacgcccaccaggggtatgggttcccggtcggc
ggcgtcgccggcatcgacgccgaaaccggcgttatatcgcctggagcggttggttacgat
attaattgcggcgtaaggatgttgaaaactaaccttacgtacagcgacattcagggtcgc
gaagagcaactcgtcgacgcgctgttcgaggcgatcccgtcggggttgggcggcggtggt
gtcgtccagaccgacgtcgacacactggaggaagtcctcacacgcggcgtcgagtgggcg
ctcgacgagggctacgccgtcgaagacgatctcgcccactgcgaggacgagggggtccgg
ccgggggcagaccccgacgcagtctcgaagaaagcaaaggacaggggccgccagcaactc
gggagtctgggcagcgggaatcacttcctcgaagtccagcgcgtcacggacgtctatcgc
gaggacgtcgccgaatctttcggtctcagcgaagaccagatcgtcgtcctgattcactgt
ggctcacgcggcctgggccaccaggtctgtaccgactaccttcgggatatcgagcaggcc
catcagggactcctagagcagttgccggacaaggaactcgcggccgcgcccgccgggagc
catctcgccgaggcgtactacggggcgatgaacgccgcgatcaacttcgcgtgggtcaac
cgccagttgatcatgcaccgaacccgggaggtctttgccgacgtcttcgaccgcgactgg
cgcgatatggagatggaactgttgtacgacgttgcccacaacatcgccaagaaggagacc
cataccattgagggccaggatcgcgaactcttcgtccaccggaagggcgcgacgcgcgcg
tttcccgccggtcacccggaaatcccggccgcctaccgcgacgtcggccagccggtcatc
atccccgggagcatgggggccgggagttacgtcctccgtggcggcgagcattcgatggcg
gagacgttcggttcgacggcccacggcgcgggccggctcatgtcccggacggaagccaag
aacacctactggggcgaggatgtccaggacgacctccgcgatcaggagcagatctacgtc
aaagccgagagcggcgcgaccgtcgccgaggaggccccgggcgtctacaaggacgtcgac
gaggtcgtgcgcatctccgacgaactcgggatcggcgatcgggtcgcccggacgtttccg
gtctgtaatatcaaagggtga
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