Humibacter ginsenosidimutans: FPZ11_03670
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Entry
FPZ11_03670 CDS
T06119
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
huw
Humibacter ginsenosidimutans
Pathway
huw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ11_03670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
huw03019
]
FPZ11_03670
03009 Ribosome biogenesis [BR:
huw03009
]
FPZ11_03670
Enzymes [BR:
huw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FPZ11_03670
Messenger RNA biogenesis [BR:
huw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FPZ11_03670
Ribosome biogenesis [BR:
huw03009
]
Prokaryotic type
rRNA processing factors
FPZ11_03670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QDZ13998
UniProt:
A0A5B8LZQ5
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All DBs
Position
complement(759348..761990)
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AA seq
880 aa
AA seq
DB search
MVENDQNSWEESHGTEGAAPRKRGRLFGGRRGTRKTEPEVQAAAPEGIPGQSVEAPATNA
VVEQPAAEQATAEATSATTVEIGRADDVAETEAQAEASDEPAAQAASAAHAAQAPGLPST
ALLFQAPPVLAPPPVAAHEETAEREEGTSRKRTRRRGGSGEGQDEAPRRQREPELITEPQ
KVKGSTRLEAKKQRRRDGRDAGRRRPVITEAEFLARREAVDRQMIVRSKGGRIQIGVLED
GVLVEHYVARSQEASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDAAETG
NQPRRIELALKSGDKVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNGISRKLPD
TERARLKKILKEVLPENTGVIVRTAAEGATQEQLTVDVNRLTAQWADISKQAESVQAPAL
LHSEPDLLIKIVRDVFNEDFQKMIIAGDDARQTIESYLRQVAPDLLERVEAYEGQRDAFD
EFRITEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEA
AEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQ
MTRKKLGLGLLETFSEPCEVCAGRGVIVHHDPVTKHRAPQPPERRRGGKTGATASANSQS
TANGHAGTHEITDDAKNALAQIAASTLHPHPDADAELAEVATEATGEAASGPKHRAAGSE
KQGDGVAVDGGPNAEGDEKKDAPRSRRGGRGRGRRGSGNGTPNNDEAVVAETPREPETSA
EVPVAVADEAQAHESVSNEHAARADDELVPPLSILDIPVQVHAEPAARVDREQAKEILGS
VLDALPEPKQPGQGRSRRRVTTAGLTGGTIAPAQDDAQHA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaacgatcagaattcatgggaagaatcgcacggcacagaaggagctgcaccg
cgtaagcgcggcaggctcttcggtggcaggcgcgggacgcgcaagaccgagccggaggtg
caggcggctgctccggagggcatccccggtcagagcgtagaggcgccggcgacgaacgcc
gtcgtcgaacagccggcggccgagcaggccacggcggaggccacgtccgcgacgacggtc
gagatcggccgtgcggacgacgttgccgagacggaagcgcaggctgaggcatccgacgaa
cccgcggcgcaggccgcctctgccgcgcacgccgcacaggcccctggcctcccgagcacg
gctctgctgttccaggcgccgcccgtactcgcaccgccgcccgtcgcggcacacgaagag
accgcggagcgggaagagggcacgtcgcgcaagcgcacgcgtcggcgaggcggatcgggg
gaggggcaggacgaggcaccgcgccgtcagcgcgagccggagctcatcaccgaaccgcag
aaggtcaagggttcgactcggctcgaggcgaagaagcagcgccgtcgcgacggccgcgac
gcgggccggcgtcgtccggtcatcaccgaggccgagttcctcgcccgccgcgaggccgtc
gaccgtcagatgatcgtgcgatccaagggcgggcgcatccagatcggcgtgctcgaagac
ggcgtgctcgtcgagcactatgttgcacgttcccaggaggcgtcgctgatcggcaacgtc
tatctcggccgggtgcagaatgtgctgcccagcatggaggccgccttcgtcgacatcggg
cgtggacgcaacgccgtgctctactcgggcgaggtcgactgggatgccgcagagaccggc
aatcagccgcgccgcatcgaactcgcgctgaagtcgggcgacaaggttctcgtgcaggtc
acgaaggacccggtcggccacaagggcgccaggctcacgagccaggtcagcctgcccggc
cgatatctcgtctacgtgcccaacgggtcgatgaacggcatcagccgcaagctgcccgac
accgagcgcgcgcgcctcaagaagatcctcaaagaggtgctgccggagaacaccggtgtc
atcgtgcgcaccgcggccgaaggcgccacccaggagcagctgacggtcgacgtcaaccgc
cttaccgcgcagtgggcggacatctcgaagcaggccgagagcgtgcaggcgccggcgctg
ctgcacagcgaacccgacctgctgatcaagatcgtgcgtgacgtcttcaacgaagacttc
cagaagatgatcatcgcgggcgacgacgccaggcagaccatcgaaagctacctccgccag
gtggcgcccgaccttctcgagcgggtcgaggcatacgagggccaacgggatgccttcgac
gagttccgcatcacggagcagatcgagaaggcgctcgaccgcaaggtgtggctgccctcc
ggcggttcgctcgtgatcgatcgcacggaggccatgacggtcgtcgacgtcaacaccgga
aaattcgtgggctccggcggcaacctcgaagagaccgtcaccaagaacaacctcgaggcg
gcggaggagatcgttcgtcagctgcggctgcgcgacatcggcggcatcatcgtcgtcgac
ttcatcgacatggtgctcgagtccaaccgcgacctcgtgctgcggcgtctcgtcgagtgc
ctgagcagagaccgcaccaagcatcaggtcgccgaagtcacctcgctcggtctcgtgcag
atgacgcgtaagaagctcggcctcggcctgctcgagaccttcagcgagccgtgcgaggtc
tgcgccggccgcggagtgatcgtgcaccacgacccggtcacgaagcacagggcaccgcag
ccgccggaaaggcgacgcgggggcaagaccggtgcgacggcatccgccaacagccagtcc
acggccaacgggcacgccggcacgcacgagatcaccgacgatgcgaagaacgcgctggcc
cagatcgcggcgagcacgctgcaccctcaccccgatgccgatgccgagctcgcagaggtc
gcgaccgaggccaccggtgaggcggcatccggcccgaagcaccgtgcagccggctcagag
aagcagggtgacggtgtggccgtcgacggcggtccgaacgccgaaggcgacgagaagaag
gatgccccgcgcagccgcagaggcggtcgcggtcgcggtcgtcgcggttccggcaacggc
accccgaacaacgacgaggccgtcgtcgcagagacgccgcgcgagccggagacctctgcc
gaggtgccggtcgctgtggccgatgaggcacaggcgcacgagtcggtctcgaacgagcac
gcggcgcgggccgacgatgagctggttccgccgctctcgatcctcgacatccccgtgcag
gtgcatgcggagcccgcagctcgcgtcgaccgggaacaggccaaggagatcctcggctcg
gttctcgatgcgcttccggagccgaagcagccgggccagggccggtcgcgtcgacgggtg
acgacggccggactcaccggcggtaccatcgcccctgctcaggacgacgcacagcacgcg
tga
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