Humibacter ginsenosidimutans: FPZ11_09860
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Entry
FPZ11_09860 CDS
T06119
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
huw
Humibacter ginsenosidimutans
Pathway
huw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPZ11_09860 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
huw03021
]
FPZ11_09860 (rpoC)
03400 DNA repair and recombination proteins [BR:
huw03400
]
FPZ11_09860 (rpoC)
Enzymes [BR:
huw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPZ11_09860 (rpoC)
Transcription machinery [BR:
huw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPZ11_09860 (rpoC)
DNA repair and recombination proteins [BR:
huw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPZ11_09860 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Motif
Other DBs
NCBI-ProteinID:
QDZ15034
UniProt:
A0A5B8M522
LinkDB
All DBs
Position
complement(2137074..2140955)
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDEQGRHDDLPGLENELRLEIKTLTDQRDSRVADRLAKLEGD
LAALEEEGAKADQKRRTRDGAEKEMSQIRKGFDEDIARLERVWESFRTLKVGDLKPEDAD
FNELVDRYGLYFTAYMGAESIKKRLEAFDLTAEAELLHDQIANGKGQKKIRAIKRLRVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVIKRLIDLQHAQNIKAAKRMVERAN
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPAQDMIIGLHHLTTIREGATGEGR
AFASVSEAILAKDQGSLDLNAKVRIRLDNLYLAEEDAPEGFVQGGTALRETSLGRAIFNE
TLPEDYPFVEDVADKGKLSSIVNDLAERYPKVEVAATLDRIKDAGFYWAARSGVTVALSD
IVTPPSKKEIIASYEKKAAKVQSEYEKGLTTEAERRQELIKIWTDATDEVAKAMRENFPE
HNTINRMVSSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYSEGLSVAEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLDLAIAARNAEGELVRDEN
VENSSFARTLATDVVDEKGTVVAEAGQDVGDVLIEKLIAAGVETIRVRSVLTCESAVGVC
AQCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQE
LFEARTPKGASPIAESAGRVHIEDTEKARYVVLTPDNGDEEHRYQVLKRSTLLVEDGDHV
ELGQQFIVGTVDPKEVLRVRGIRAVQEHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKV
TVVDHGETELLPGEFVDRSRYNEINRAALADGKKTASARQEVMGITKASLATESWLSAAS
FQETTRVLTQAAMEGKRDPLIGLKENVIIGKLIPAGTGLTRYRNVSVEATEEAKAERYPN
RIFTDDTVFNENDLSFVDFDSFSSDDYTPGTYN
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacaacttttgacgagcttcgtatcggcctggccacggcagacgacatc
cgtcgttggtcccacggtgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacggtctgttcggtgagcagatcttcgggccgtcgcgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgctgtggcgtg
gaggtcaccaagtcctccgtgcgccgcgagcgcatgggccacatcgagctcgccgcccct
gtgacgcacatctggtacttcaagggcgttccgagccgtctgggctacctgctcgacatg
gctccgaaggacctggagaaggtcatctacttcgccgcctacatggtgatcgacgtggat
gagcagggtcgtcacgacgacctgcccggcctggagaacgagctccgtctcgagatcaag
acgttgaccgaccagcgcgactcccgcgtggccgaccgcctcgccaagctcgagggcgac
ctcgctgctctggaagaggagggcgccaaggccgaccagaagcgccgcacccgcgacggc
gccgagaaggagatgtcgcagatccgcaagggcttcgacgaggacatcgcccggctcgag
cgcgtgtgggagtcgttccgcacgctcaaggtcggcgacctcaagcccgaggatgccgac
ttcaacgagctcgtcgaccgttacggcctgtacttcacggcctacatgggtgccgagtcg
atcaagaagcggctcgaggccttcgacctgacggccgaggccgagctgctgcacgaccag
atcgccaacggcaagggtcagaagaagatccgcgccatcaagcgtctgcgcgtggtcaac
tcgttcctgcagaccggcaactcgccggccgccatggtgctcgatgtcgttccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgccacgagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgccttcgtcgtctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggtcgccgcggccgtcccgtcacgggcaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatcgtgggcccgcagctcaagctgcaccag
tgcggtcttccgaaggacatggcgctcgagctgttcaagccgttcgtcatcaagcgtctg
atcgacctgcagcacgcgcagaacatcaaggccgccaagcgcatggtggagcgcgcgaac
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgttctgctgaaccgt
gcgcccacgctgcaccgtctgggcatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctccacccgctcgtgtgtgctgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtcggtggaggcacaggccgaggcgcgcatcctcatgctc
gcgtcgaacaacatcctgaagccgtccgacggccgcccggtgaccctgcccgcacaggac
atgatcatcggtctgcaccacctcaccaccatccgcgagggtgcgacaggcgagggccgc
gcgttcgcgtcggtgtccgaggcgatcctcgccaaggaccagggttcgctcgacctgaac
gccaaggtgcgcatccgtctcgacaacctgtacctggccgaagaggatgccccggagggc
ttcgtgcagggcggcaccgcactgcgcgagacgtcgctcggccgcgccatcttcaacgag
acgctccccgaggactacccgttcgtcgaggacgtcgccgacaagggcaagctcagctcg
atcgtgaacgatctggccgagcgctacccgaaggtggaggtcgccgccacgctggaccgc
atcaaggatgccggtttctactgggcagcacgctccggcgtcaccgtcgcgctcagcgac
atcgtgaccccgccctcgaagaaggagatcatcgcctcctacgagaagaaggcggcgaag
gtccagagcgagtacgagaagggtctgaccaccgaggccgagcgccgtcaggagctcatc
aagatctggacggatgccaccgacgaggtcgccaaggccatgcgcgagaacttcccggag
cacaacaccatcaaccgcatggtgtcctccggcgctcgtggtaactggctgcaggtgcgc
aacatcgccggtatgcgcggtctggtgaacaacccgaagggtgagatcatcccgcgtccg
atcatctcgagctactccgagggtctctcggtggccgagtacttcatcgcgacgcacggt
gcccgcaagggtctggccgacaccgctcttcgtacggcagactccggttacctcactcgt
cgtctggtggacgtctcgcaggatgtcatcatccgcgaagacgactgcggcacgacgaag
ggtctggacctggcgatcgccgctcgcaacgccgagggtgagctggtgcgcgacgagaac
gtggagaactcctcgttcgctcgcaccctggccaccgacgtcgtggacgagaagggcacc
gtcgtggcggaggccggtcaggacgtcggcgacgtgctgatcgagaagctcatcgcggcg
ggcgtcgagaccatccgcgtgcgttcggtgctcacctgcgagtccgccgtcggcgtgtgc
gcgcagtgctacggccgttcgctggccacgggcaagctcgtggacatcggcgaggccgtc
ggcatcatcgcggcgcagtccatcggcgagccgggcacgcagctgacgatgcgtaccttc
cacaccggtggttcggcatccgccgacgacatcacgcagggtcttccccgcgtgcaggag
ctgttcgaggcgcgcaccccgaagggtgcctccccgatcgccgagtcggccggtcgcgtg
cacatcgaggacaccgagaaggcgcgctatgtcgtgctcacccccgacaacggagacgag
gagcaccgctaccaggtgctcaagcgttcgacgctgctggtggaggacggggaccacgtc
gagctcggtcagcagttcatcgtcggcacggtcgaccccaaggaggtgctgcgcgtgcgc
ggcatccgcgcggtgcaggagcacctcgtgggcggcgtgcagggcgtgtaccgctcgcag
ggtgtgccgatccacgacaagcacatcgaggtcatcgttcgccagatgctgcgcaaggtc
accgtggtcgaccacggcgagaccgagctgctgcctggcgagttcgtcgaccgttcgcgc
tacaacgagatcaaccgcgccgcgctcgccgatggcaagaagacggcatccgcccgccag
gaggtcatgggtatcaccaaggcctcgctcgcgacggagtcgtggctgtcggccgcatcg
ttccaggagaccacgcgtgttctcacgcaggccgccatggagggcaagcgcgacccgctg
atcggtctcaaggagaacgtgatcatcggaaagctgatcccggccggtacgggtctgacc
cgctaccgcaacgtgtcggtggaggccacggaggaggcgaaggcggagcgttacccgaac
cgcatcttcaccgacgacaccgtgttcaacgagaacgacctgagcttcgtcgacttcgac
agcttcagctcggacgactacaccccggggacttataactga
DBGET
integrated database retrieval system
