Humibacter ginsenosidimutans: FPZ11_10550
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Entry
FPZ11_10550 CDS
T06119
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
huw
Humibacter ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
huw03032
]
FPZ11_10550
03400 DNA repair and recombination proteins [BR:
huw03400
]
FPZ11_10550
Enzymes [BR:
huw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FPZ11_10550
DNA replication proteins [BR:
huw03032
]
Prokaryotic type
DNA Topoisomerases
FPZ11_10550
DNA repair and recombination proteins [BR:
huw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FPZ11_10550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QDZ15151
UniProt:
A0A5B8M4K2
LinkDB
All DBs
Position
2300372..2301343
Genome browser
AA seq
323 aa
AA seq
DB search
MPGRADRLRRSDPSAAGIRRIAGRGQESFSYATEEGGHPDAATLTRIEELAVPPAWTDVW
ICADPRGHIQAVGTDAAGRRQYLYHEQWRRQRDEAKFDRALELAAALPHARRAVSHDLGK
DAFGHERALAGAFRIVDRASVRIGGEQYRRLYGSRGVTTLRCRDATVEGADVILGFPSKS
GQYWESAVTDPLLARYLRAVIEIRGAASRLIAWRASRWQPISSAELNDYIRTRTGVEATA
KDFRTLRGTIVAAQSLARSAREPGGESDADVRAAMRSAAEVLGNTPAIARASYVDPRVID
RFRSGETLRLSGSSESALLALLS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcagagctgaccgactgcggcgcagcgacccgagcgctgcgggcatccgccgg
atcgcgggccgaggccaggagagcttctcgtacgcgaccgaggagggcgggcatccggat
gccgcaacgctcacccgcatcgaggagctcgccgtgccgccggcatggacggacgtctgg
atctgcgcggacccgcgcggacacattcaagcagtgggaaccgatgccgcggggcgtcgg
cagtatctctaccacgagcagtggagacggcagcgcgacgaggcgaagttcgatcgcgcg
ctcgagctcgcggccgcgctgccacacgccagacgcgcggtctctcacgatctcggaaag
gatgcgttcggtcacgagcgcgcgctcgccggggcgttccggatcgtcgaccgagcctcg
gtgcgcatcggtggcgagcagtaccggcgactgtacggcagccggggagtcaccacgttg
cggtgccgagacgcgaccgtggaaggggccgacgtgatcctcgggttcccgtcgaagagc
ggacagtattgggagtcggcggtcaccgacccactgctggcacgctatctgcgcgccgtg
atcgagatccgcggcgcggcctctcgccttatcgcatggcgagcatcgcgctggcaaccg
atatcgagcgcggagctcaatgactacatccgcacccgaacgggcgtcgaggccacggcc
aaggacttccgcacactgcgcggcaccatcgtggccgcgcagtctctcgcacgatctgcc
cgcgagcccggcggcgaatccgatgccgacgttcgtgccgcgatgcggtccgccgcggag
gttctcggcaacacgcccgccatcgcacgggcgagctacgtcgacccccgagtcatcgat
cgttttcggtcgggagagaccctgcgcctgagcgggtcatccgagtcggccctcctcgcg
ctcctgtcgtga
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