Humibacter ginsenosidimutans: FPZ11_18865
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Entry
FPZ11_18865 CDS
T06119
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
huw
Humibacter ginsenosidimutans
Pathway
huw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
huw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ11_18865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
huw03021
]
FPZ11_18865
03019 Messenger RNA biogenesis [BR:
huw03019
]
FPZ11_18865
Transcription machinery [BR:
huw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FPZ11_18865
Messenger RNA biogenesis [BR:
huw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FPZ11_18865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Herpes_TAF50
AAA_25
Spore_III_AA
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QDZ16533
UniProt:
A0A5B8M7X4
LinkDB
All DBs
Position
4127156..4129306
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AA seq
716 aa
AA seq
DB search
MTDVNLRADGADSTTDLSALRVPQLQALASELGISGAAKLRKGELVAAIEAARGAAAPAA
VEPTVAAQLELPVEDEAVPATAPSAESDAQAPAESELSPAQAEAALQAALDLQTPPARAR
RGSRRVTSVDGGHTVSAAGHVNHGEAGLPPLADDSGADDAQAVPAARDAATEASAADTSS
DVEQKASEKDAAAAAETPEGAQGEQQPRQGRRNRGRNKNRRGENGQAENGQQAADAEQGQ
SDQQNQNGQQNKGQGGQQTQQKQGQNQRGQNGQQGQQNNRQNQGGQQNQGQQGDDERGGR
GRYRDRKRRGAGDEVEPEILEDDVLIPVAGILDVLDNYAFVRTSGYLPGPSDVYVSLGQV
KKYNLRKGDAVVGAIRQPREGENTGRQKYNALVKVDSVNGQSNDEAQNRVEFTKLTPLYP
QERLRLETEPTKLTQRIIDLVAPIGKGQRGLIVAPPKAGKTIVMQQIANAITTNNPEVHL
MVVLVDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLL
DSITRLSRAYNLAAPASGRILSGGVDASALYPPKRFFGAARNIEHGGSLTILATALIETG
SKMDEVIFEEFKGTGNSELRLSRQLADKRIFPAVDVNASGTRREEMLMSADEVKITWKLR
RALAGLDQQQALEVVLGKLKETSSNVEFLVQMQKSMPAPTNGHGVAHSHAHENDHR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatgtcaatctccgcgccgatggcgcggactccaccaccgatctgtcggcgctg
cgtgtgccgcagctgcaggccctggcctccgagctgggcatctccggcgcggcgaagctg
cgcaagggcgagctcgtcgccgccatcgaggcggcgcgcggtgcagcggctcctgccgcg
gtcgagccgacggtcgccgcgcagctcgagcttccggtcgaggacgaagccgtccccgcg
accgcgccgagcgcggaatccgatgctcaggcgcccgccgagtcggagctcagcccggcc
caggccgaggcagccctgcaggccgctctcgacctgcagaccccgccggcgcgcgcgcgt
cgcggctcccgtcgcgtcacgagcgtcgacggcggccacacggtgtccgccgctggccac
gtgaaccacggcgaggccggcctcccgccgctcgccgacgactcgggcgccgacgatgcc
caggctgttcccgcggcacgcgatgctgcgaccgaggcctccgccgccgacacgtcgtcg
gacgtcgagcagaaggcgtccgagaaggatgccgctgccgccgctgagacgccggagggc
gcccagggcgagcagcagccgcgtcagggccgtcgcaaccgcggccgcaacaagaaccgc
cgcggcgagaacggccaggccgagaacggccagcaggccgcggacgccgagcagggccag
agcgatcagcagaaccagaacggccagcagaacaagggccagggcggtcagcagacccag
cagaagcagggccagaaccagcgcggccagaacggccagcagggccagcagaacaaccgc
cagaaccagggcggccagcagaaccagggtcagcagggcgacgacgagcgcggcggccgt
ggccgttaccgcgaccgcaagcgtcgcggtgccggtgacgaggtcgagcccgagattctc
gaagacgacgtgctgatccccgtggcgggcatcctcgacgtgctcgacaactacgcgttc
gtgcgcacgagcggctacctgcccggcccgagcgacgtgtacgtctcgctcggccaggtg
aagaagtacaacctgcgcaagggcgacgccgtggtcggcgccatccgccagccgcgcgag
ggcgagaacaccggacgccagaagtacaacgcgctcgtcaaggtggactccgtcaacggc
cagtccaacgacgaggcgcagaaccgcgtcgagttcaccaagctcaccccgctctacccg
caggagcgcctgcggctggagaccgagcccaccaagctcacgcagcgcatcatcgacctg
gtcgctccgatcggcaagggtcagcgcggcctcatcgtggcgccgcccaaggccggcaag
accatcgtgatgcagcagatcgccaacgcgatcaccacgaacaaccccgaggtgcacctc
atggtcgtgctcgtggacgagcggcccgaagaggtcaccgacatgcagcgcacggtcaag
ggcgaggtcatcgcgtccacgttcgaccgtcccgccgaagaccacaccactgtcgccgag
ctcgccatcgagcgcgcgaagcgcctggtggagctgggccacgacgtcgtcgtgctgctc
gactcgatcacgcgcctcagccgcgcgtacaacctggcggcgccggcatccggtcgcatc
ctctccggcggtgtcgacgcgtcggcgctctacccgccgaagcgcttcttcggcgcagcg
cgcaacatcgagcacggcgggtcgctgaccatactggccacggcgctcatcgagaccggg
tccaagatggacgaggtcatcttcgaggagttcaagggcaccggcaactcggagctgcgc
ctgtcgcgtcagctcgcagacaagcgcatcttcccggccgtcgacgtgaacgcgtcgggc
acgcgccgcgaggagatgctgatgagcgccgacgaggtgaagatcacctggaagctgcgt
cgcgcccttgcgggcctcgatcagcagcaggcgctcgaggtggtgctcggcaagctcaag
gagaccagctccaacgtggagttcctcgtgcagatgcagaagtcgatgccggcgcccacg
aacggtcacggcgtcgcgcactcgcacgcgcacgagaacgaccaccgctag
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