Hordeum vulgare subsp. vulgare (domesticated barley): 123394906
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Entry
123394906 CDS
T11213
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 isoform X1
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hvg03016
]
123394906
Enzymes [BR:
hvg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
123394906
Transfer RNA biogenesis [BR:
hvg03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
123394906
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GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
Methyltransf_12
Methyltransf_25
Motif
Other DBs
NCBI-GeneID:
123394906
NCBI-ProteinID:
XP_044945713
UniProt:
A0A8I6YNH2
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Position
5H:complement(570118471..570122398)
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AA seq
459 aa
AA seq
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MDLPPANGVPTPELPPPPPGRCHFWLPNKRRHCANTPIPSSQYCGNHSPASSSDSRRRVP
CPVDPSHTVFEENLEAHVGKCPFRKQADALAAQPYYSKGINSGGGEAGGAVVTSAAKRAS
VHKLSEEEFWGLVVKIRSAHTAAAVEMRESYIAPDACDKWMKGQVDRKVPYQEKHVVQQV
SIVGNMETFGLLPRGGAEDATDEIAVKNPPAAVEFGAGRGYLTQMLADCYGIKNIFLVER
RAYKLKADRSLRQNEGVKLERLRIDIEDLNLHGVQALNGGQYLAIGKHLCGPATDMTIMC
CLHEQHNHTEEKGHDKHHLRGLALATCCHHLCQWKHYANKSFFSGLGIAEEEFHAMTWFS
SWAVDGDHSSQDSLEAEDLSSEGRNRETEKPDPEIIGVERIIRSIPGVERSALGFMCKDI
IDTGRLLWLRSKCLDADLVRYVPSDISPENHLLIAKCRS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggacctccctccggcgaacggcgtaccgacgccggagctgccgccccctcctccgggc
cgttgccacttctggctccccaacaagcgccgccactgcgccaacacccccatcccctct
tcccagtactgcgggaaccactcgccggcgtcctcctctgactcgcgccgccgcgtcccc
tgccccgtcgacccctcccacacggtgttcgaggagaacctggaggcccacgtcggcaag
tgcccctttaggaagcaggccgacgcgctcgccgcacagccgtactactccaagggcatc
aactccggcgggggagaggccggtggcgccgtcgtcacctccgccgccaagcgcgcctcc
gtgcacaagctctcagaggaggagttctggggcttggttgtgaagatccgttcggcgcat
actgcggcagccgtcgaaatgcgtgagtcctacatcgccccggatgcctgcgacaagtgg
atgaaggggcaggttgataggaaggtgccgtaccaggagaagcacgttgtgcagcaggtg
tcgatcgtcgggaacatggagacatttggtttgctgccgaggggaggcgctgaggatgca
acggacgagatcgcggtgaagaatcctccggcagctgttgaatttggtgctgggaggggt
tacttgactcagatgttggcagactgttatggcatcaagaatatcttcttggtcgagaga
cgagcttacaagctcaaggctgatcgaagtttaaggcaaaatgagggtgttaaattggag
cgtttgagaatagatattgaggatttgaacctgcatggagtgcaagcgttgaatgggggt
cagtatctagcaattggaaaacatctatgtgggcctgcaacagatatgaccataatgtgc
tgtcttcatgaacaacacaatcatacagaagagaaaggccacgacaagcaccatctccgg
ggccttgctttagcaacctgctgccaccatctctgccaatggaagcattatgcaaataaa
tctttcttctccggactagggattgcggaggaagagttccatgccatgacatggtttagc
agttgggctgtggatggtgaccacagctcccaggactctttggaggctgaagacttatct
tccgaaggcaggaatagagaaaccgagaagcctgatccggagattattggagtcgagaga
ataatccgcagtatacctggcgtcgagaggagcgccctcgggttcatgtgcaaagatatc
attgacaccgggaggctgctgtggcttaggtccaagtgtctagatgcagaccttgtaaga
tatgttccatcagatatttcgccagagaaccatttgctcatcgccaagtgtaggtcttga
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