Hordeum vulgare subsp. vulgare (domesticated barley): 123395110
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Entry
123395110 CDS
T11213
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 15-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hvg01009
]
123395110
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123395110
04131 Membrane trafficking [BR:
hvg04131
]
123395110
03036 Chromosome and associated proteins [BR:
hvg03036
]
123395110
Enzymes [BR:
hvg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
123395110
Protein phosphatases and associated proteins [BR:
hvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123395110
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
123395110
Membrane trafficking [BR:
hvg04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123395110
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
123395110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
123395110
NCBI-ProteinID:
XP_044945979
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Position
5H:61112291..61118210
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AA seq
437 aa
AA seq
DB search
MSFSGCTVYAASVLVSTAIGFDERMLLHSEMETKPNPHPERPNRLRAIAASLAAAGIFPS
KCALVPPREITKEELVMVHTSDHVESVEQTKNMLYSYFTSDTYANGHSACAAKLAAGLCA
DLASLIVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAQKAGAKKVLIVDWD
VHHGNGTQEIFEGNKSILYISLHRHEDGSFYPGTGAADEVGVLDGKGFSVNIPWSCGGVG
DNDYIFAFQHVVLPIATEFAPDITIISAGFDAARGDPLGCCDVTPAGYSQMTSMLTACSE
GKLLVILEGGYNLRSISSSATEVVKVLLADGPSYGTDAAAPSKEGMQTVLHVLDIQRKYW
PVLVPIFASLQAQQGQTSSKYANAENKLKRRMLMGGPGPVWWKWGSKRLLYEILFEGRRP
RKSKARGKEALTDETKP
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttctggttgcactgtttatgcagcatcggtactggtatctacagcgattggt
tttgatgaaagaatgttgctccacagtgagatggaaactaaaccaaatccacatcccgaa
agacccaaccgtcttcgtgcaattgctgctagtctggccgctgcaggaatatttccctca
aagtgcgccttggtacctcctcgagaaataactaaggaggaactcgtaatggtccatact
tcagatcacgtcgaaagcgtagagcagacgaagaacatgctttacagttacttcacttcg
gatacttacgcaaatggacactcggcatgtgctgccaaacttgcagcaggtttatgtgct
gatcttgctagtttgatagtgtctgggcgtgtccggaatggctttgcactggtgagacct
cctgggcatcatgctggggtaaagcaagccatgggcttttgtcttcacaacaatgcagca
gtggctgcattagctgcacaaaaagcaggcgccaagaaagtcttgatagttgactgggat
gtgcaccatggcaatggcacacaggaaatatttgaagggaataaatcaattttgtacata
tcattgcatcgccatgaggatggaagtttctaccctggaactggagcagcagacgaggtg
ggagttctggatggtaaaggattctcggtaaatataccttggagttgtggtggtgtcgga
gacaatgactacatctttgcatttcagcatgtggtgcttccaatagctacagaatttgcc
ccagatatcaccattatatctgcaggatttgatgcagcaaggggtgatcctctgggttgt
tgcgatgtcactcctgctggatactctcagatgacgtccatgttaactgcttgctcagaa
ggaaaattgttggttatacttgagggaggatacaatcttcggtctatatcctcatcggca
actgaagttgtcaaggtcctactcgcggacggtccaagttatggcacagatgcagccgca
ccatcaaaggagggcatgcagactgtcttacatgttctggacatccagcgaaagtattgg
ccagttttagttccaatctttgcatcacttcaagcgcagcaggggcagacttcttccaaa
tatgctaacgccgaaaacaagctgaagagaaggatgcttatgggaggaccagggcctgtg
tggtggaaatggggaagcaagaggcttttgtacgaaatactgtttgagggccgccgtcca
agaaagagcaaggcgagaggaaaagaagctctgactgatgaaacaaaaccctag
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