Hordeum vulgare subsp. vulgare (domesticated barley): 123395178
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Entry
123395178 CDS
T11213
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123395178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123395178
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123395178
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123395178
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123395178
U7-dependent histone pre-mRNA processing factors
123395178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF3213
Motif
Other DBs
NCBI-GeneID:
123395178
NCBI-ProteinID:
XP_044946053
UniProt:
A0A8I6Y515
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All DBs
Position
5H:complement(582207478..582212010)
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AA seq
692 aa
AA seq
DB search
MASAATAPPAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS
GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS
DYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHN
TVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS
MNERIRNQFAQSNPFHFKHIDPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDK
KNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAHADFPQTSGFLGE
LCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSVEMYFSSEKMAKTIGRLA
EKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFEVIKYRLK
QIYESVESSTEEDVPTLTVHERVAIRLDSESYVTLQWSSDPISDMVSDSVVAMILNIGRE
GPKVVPIEEAVKTEEETERVGRKVVYALMVSLFGDVKVAEEGKLIITVDGDAAHLDGRSG
DVECASAGLKERIKTAFRRIQGAVRPIPLSAS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgccgcgacggcgccgccggcggggaagcggccggcgacgggcggccgggag
ggcgaccagatggtggtcacgccgctcggcgccggcagcgaggtcggccgctcctgcgtc
cacatgaccttcaagggccgcaccgtcctcttcgactgcggcatccacccggcctactcc
ggcatggcggcgctgccctatttcgacgagatcgacccctccgccatcgacgtcctcctc
gtcacccacttccacctggaccacgccgcctcgctgccctacttcctggagaagacaacg
tttaagggccgcgtgttcatgacccacgccaccaaggctatttacaggttgctgctgtcg
gattacgtcaaagtgagcaaggtttccgtcgaggacatgctgtttgacgagcaggacatc
atccgttcaatggacaaaatcgaggtcatagacttccaccagacattggaagttaatggc
atacgcttctggtgctatactgctggccatgtgcttggtgctgccatgttcatggtggat
attgctggtgttcgcattctttacactggtgactactcccgtgaagaagaccgacacctt
aaagctgctgagataccccagttctcccctgatatttgcatcatcgaatcaacttatggt
gtgcagcaacaccaaccccgccatgtcagagagaagcgcttcactgatgccattcacaac
actgtttctcaagggggtcgtgttcttatcccagcgtttgctcttggtagagcacaggag
ctgttgcttatcctggatgagtattggtctaaccacccagagcttcacaagattccaatc
tattatgcctcccctcttgccaagaagtgcatggctgtgtaccagacatacataaactcc
atgaatgaaagaatccgaaaccagtttgcgcagtccaatcccttccatttcaagcatatt
gaccctttgaatagcatagacaacttccatgatgtgggtccgtcagtggtgatggcaagt
ccaggtagcctccaaagtggcctctccagacagctctttgacaagtggtgcacagataag
aagaacacatgtgttattccaggttatgctgtcgaaggctcgcttgcaaagacaatcatc
aatgagccaagagaagtgacactagcaaacgggctcactgctcctcttaacatgcagatc
ttctacatctccttctcagctcacgctgatttcccacagacgagcggcttcttgggtgag
ctttgtccacccaacattattcttgtacacggggaagcaaatgagatgggtaggcttaag
cagaaacttatcactcagtttgatgggacaaacacaaaaatcgtgtctccgaagaactgc
caatcagtggagatgtattttagttctgagaaaatggccaagacaattggcagactggcc
gagaaggtaccggaagtgggcgactcagtcagtggcttgctcgtgaagaagggcttcact
taccagatcatggcccctgaagatctccgggtgtacacacaactttctactgccaacata
actcagcggattgctgtcccatattctggttcttttgaggtgatcaagtacaggctgaag
caaatatacgagagcgtggaatcatcaaccgaagaagatgttccaacactcactgttcac
gagagagtggccatccgcctggattcagagagctacgtgacactgcagtggtcctctgat
cccataagcgacatggtgtccgactcggtggtggccatgatcttgaacattgggcgtgag
ggtccaaaggttgttccaatcgaagaagcggtgaagacggaagaagaaacggagagggtg
gggcggaaggtcgtgtatgccctcatggtgtcgctcttcggcgacgttaaagttgcagag
gaagggaagctcatcataactgtggatggagacgccgcacacttggatgggaggagcggt
gatgtcgagtgcgcgagcgccgggctgaaagaaaggatcaagaccgcgtttcgtcgcata
cagggtgcggtgagaccaatcccgctctcggcctcctga
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