Hordeum vulgare subsp. vulgare (domesticated barley): 123395761
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Entry
123395761 CDS
T11213
Name
(RefSeq) aladin
KO
K14320
aladin
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123395761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123395761
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123395761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANAPC4_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD40_Prp19
Beta-prop_EML_2
eIF2A
Beta-prop_WDR35_TULP_N
WDR55
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
123395761
NCBI-ProteinID:
XP_044946727
UniProt:
A0A287R0J1
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All DBs
Position
5H:310874386..310883027
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AA seq
442 aa
AA seq
DB search
MPSFPPPGGVTVCEINRDLVVADSLSEERAKEAYGDVLGMVFSPIPFQPDDLLAKHEAPA
PDEAEPTECIPRTSLVSTIAESFKQMLFPSCNPKLLEEFDTKKVSWNPHKHCLAFVSGKD
QVTVHDFEDSDGKESCSLTSEHQKEVKAIEWRPNSGKMIAVGCKGGICLWSASYPGNVAS
VKSGVTSSSFGAFPRGSTGQWILVDVLRGSSTELVSALCWKPDGRYLASASCNGQSFTIW
DVSEGLGTPIRRGLSSISLVRWSPSGDYFLTAKFDGTFHLWETNTWTSEPWSSSNGYVTG
ANWDPEGRVALLSFSNSTTLGSVHFSSKPPSLDAHLLPVELPEISSLIVSRGIEKLAWDA
SGERLALSFKDGNETYQGLVAVYDVRRSPLVSVSLVGFIRGPGEGVKALAFAFHNKFKQG
PLLSVCWSSGWCCTYPLILRSH
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcttccctccgccgggcggcgtcaccgtctgcgagatcaaccgcgacctcgtt
gtggcggactccctctcggaggaacgcgccaaggaggcctacggggatgtcctggggatg
gtgttcagcccaattcctttccagccggatgatctcctagcgaagcacgaggctcctgct
ccagacgaagctgagcccactgagtgtatccccaggacaagtttggtgtccaccatagcc
gagtccttcaagcaaatgctcttcccttcttgcaatccaaaactgctagaagaatttgat
accaagaaagtaagctggaatccgcacaaacactgtttagcatttgtatctgggaaggac
caggttacggtccatgactttgaggattcagatggtaaagaatcgtgcagtctaacaagt
gaacatcaaaaggaagttaaagctattgaatggaggccaaacagcgggaagatgattgca
gttggctgcaagggaggtatatgcctctggtcagcatcatatcctggcaatgttgcatcc
gtgaaatctggtgtcacttcttcttcctttggtgccttccctagaggttctactggtcag
tggattctggtggatgttcttcgtggttcttctactgagctagttagtgcactttgctgg
aaacctgatggaagatacttggcctcggcctcttgtaatggccagtcattcacaatttgg
gatgtttctgaagggttgggaactcctatacgacgcggattaagtagcatatcgttggtg
cggtggtcacctagtggagattactttttgactgctaaattcgatggaacttttcactta
tgggagaccaacacatggacgtcagaaccctggtcttcatccaatggatatgtaactgga
gcaaactgggaccctgaaggccgtgttgcattgttatccttttctaactcgaccacacta
ggttcagttcacttctcatcaaagccaccatctttagatgcccatctcttaccagtggag
cttccagaaatttcctctctgattgttagtcgaggcatagagaaattagcatgggatgct
tcaggagagcgcctggcattgtcattcaaagatggtaatgaaacatatcagggacttgtt
gctgtctatgacgtgagaagatctccgcttgtgtcagtttcgctggttggattcatcaga
ggacctggagagggcgtgaaggcactcgcgttcgccttccacaacaaattcaagcaagga
ccgctgctttctgtgtgctggagcagcggctggtgttgcacataccctctgatactccgc
tcccattaa
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