Hordeum vulgare subsp. vulgare (domesticated barley): 123395895
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Entry
123395895 CDS
T11213
Name
(RefSeq) LOW QUALITY PROTEIN: protein argonaute 16-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123395895
03036 Chromosome and associated proteins [BR:
hvg03036
]
123395895
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123395895
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123395895
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
123395895
microRNA pathway
RISC loading complex
123395895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
123395895
NCBI-ProteinID:
XP_044946857
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Position
5H:356276080..356286637
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AA seq
887 aa
AA seq
DB search
MAAKTGGAVQVHKNDTVKRTAMARRGLGREGKPIRLLSNHFAVKLSGIDAVFYQYSVSIK
SDDDQVVEGKGIGRKVIDKMLQTYSSELAGKDFAYDGEKCLFTVGPLPQNNFEFTVIMEE
TSARAVGGSPGHESPGPGDKKRVKRSHLPKQFVVGISYAARIPLRSVALALQGSDSDHAQ
DALRVLDIVLRQQQAKRGCLLVRQSFFSDDSRNLVDLTGGVSGCRGLHSSFRTTMNGLSL
NMDVSTTMIVTPGPVVNFLLTNQNVRDIRDIDWPKAKRMLKNLRVKATHNNMEFKIIGLS
DQPCSRQTFPMKVRSGSSEGETVDITVEEYFKSKQVFLEKPYLPCLDVGKPKRPNYLPIE
LANMISLQRYTKALSSQQRTTLVEKSRQKPQDRMRVVTDAVKSNRYDDDPIFSSCGIKID
NQLTRVDGRVLPAPMLVVGNSQDCVPFKGRWNYNNKKLFEPVSIERWAIVNFSARCDMSR
ISRDLINCGRTKGIIIEGPYSLVDEDNQARRCAPIVRVERMFEKVKANLPGPPEFLLCVL
PERKNCDIYGPWKKKNLHEMGIVTQCIVPSTKMNDQYFTNVLLKINAKLGGMNSKLALEH
SRTIPVINKIPTIILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRTQSPKVEM
IDSLFKPLDSGKDDGIIRELLLDFYTTSQQRKPEQIIIFRDGVSESQFSQVLNLEVDQII
KAYQNMGQGPPPKITVIIAQKNHHTKLFQADAPDNVPAGTVVDSGIVHPKQYDFYMCAHA
GPIGTSRPTHYHVLLDQIGFTPDELQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMS
QFIKFEEFADTSSGSGVPSSSTAAQSRNCHGCILTSAVRCSFVDVGF
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaaaacgggtggagctgtacaagtgcataagaatgacactgttaaacgcaca
gcaatggcacggcgtggcttgggccgtgaaggaaagcccattaggttgctgtcaaatcac
tttgctgtgaagcttagtgggattgatgcagttttctaccaatacagtgtgtccatcaaa
tctgatgacgatcaggtggttgaaggcaagggcattggccggaaggtcatcgataaaatg
ttgcaaacatacagttctgagcttgctggaaaggattttgcatacgatggcgagaaatgt
ctatttactgttggacctcttccacagaacaacttcgagttcactgttattatggaggaa
acatctgcaagggctgttggtgggagtccaggacatgaaagccctggcccaggcgacaag
aaacgagtaaagaggtcacatcttccaaaacagttcgtagtgggtataagttacgcagca
aggattcccctcagatcagttgccctagcgcttcaaggaagcgactcggatcatgcccag
gatgctctgagagtccttgacattgttttaaggcaacagcaggctaagcgaggttgtcta
cttgttagacaatcattttttagtgatgacagtagaaatttagttgatttaactggtgga
gtcagtggttgtcgtggactccattctagcttccgtactacaatgaatggtttatcttta
aacatggatgtttccactactatgattgtgacccctggacctgttgtcaacttcctcctt
acaaatcaaaatgtcagagacattagagacattgactggcccaaggcaaagagaatgttg
aaaaacctgagagttaaagctacacacaacaacatggaatttaagatcattgggcttagt
gatcagccttgttctagacagacatttccaatgaaagttcggagtggaagcagtgaaggt
gaaactgttgatattactgttgaggaatattttaaatccaagcaggtgtttttggagaag
ccttatctaccatgtcttgatgtgggaaaaccgaaacgcccgaattatctcccaattgag
ctggctaacatgatatcacttcaacgttatacgaaggcgctgtcttctcagcaaagaacg
acattagttgaaaaatcacgacagaaacctcaggatcgcatgagagttgttactgatgca
gtaaaaagtaacagatatgatgatgacccaatattttcttcttgtggcattaaaattgat
aatcaactcacgcgtgttgatggtcgtgttctgcctgcaccaatgttggttgtgggaaat
agtcaagattgtgttccattcaagggcaggtggaattataataacaagaaattatttgag
cctgtcagtatcgagcgttgggcaattgtgaacttctctgctcgttgtgacatgagccgg
atatcaagagatctgataaactgtggacgaaccaaaggcattatcatcgaaggtccttac
agcctggtggatgaagataaccaagctaggagatgtgctcccattgtaagagttgaaaga
atgtttgaaaaagttaaagcaaaccttcctggtcctccggaatttctgctatgtgtttta
ccagagaggaagaattgtgatatttatggcccatggaagaagaaaaatcttcatgagatg
ggtattgtcactcaatgcattgttcctagtactaagatgaatgatcaatacttcaccaat
gttcttctaaagatcaatgctaagcttggcggaatgaactctaagctggcactggagcat
agccgtacgattccagttatcaataagatacccacaataattttgggaatggatgtttca
catggttctccaggtcgatcagatataccatcaattgctgctgttgttggatctagatgt
tggccactaatatcgcgctacagggcatctgtacggacccagtctccaaaggttgagatg
attgattctctttttaagccactggatagtggaaaggatgatggtataataagggaactt
ctactagacttctacacaaccagtcaacaaagaaagccagaacagataatcattttcagg
gatggtgtgagtgagtctcagtttagccaagtactgaatctcgaggttgatcaaataata
aaggcttaccagaatatgggtcaggggccacctccaaagattacagttattattgctcaa
aagaatcaccacacgaaactgttccaagctgatgcaccagataatgttccagctgggact
gtagtggactcgggtattgttcatccgaaacagtatgatttctacatgtgtgctcatgcg
ggacctataggcacctcaaggcccacccattatcatgtcttgcttgatcagattggtttc
acaccagatgaactccagaaactagttctttcgctttcctatgtgtaccagaggagcacc
actgcaatatctgtggtggcacctatctgttacgcgcaccttgcagcagcgcagatgagc
cagttcataaaattcgaggagtttgctgatacttcatctgggagtggtgtcccttcgtca
tcaacagcagcacagtcccggaactgccacggctgcattctgacgtctgcagttcgatgt
tcttttgttgacgtgggcttttag
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