Hordeum vulgare subsp. vulgare (domesticated barley): 123397168
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Entry
123397168 CDS
T11213
Name
(RefSeq) nuclear pore complex protein NUP58-like
KO
K14307
nucleoporin p58/p45
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123397168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123397168
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123397168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
CorA
Motif
Other DBs
NCBI-GeneID:
123397168
NCBI-ProteinID:
XP_044947755
UniProt:
A0A8I6XSV9
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Position
5H:complement(532880559..532885491)
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AA seq
486 aa
AA seq
DB search
MSRLDGNTDLDGVARRLSFSSASPGQLPPRSPRRQPALPPIAEDPGEQQASAGATTPSST
PRATTRGRFTVYTEAPPSAPHTQAPPAPPAASASTSTSPLETQQAVAAALGHLEQQRQAG
LQQASVAAQQQQAFVAAYEGWERRRQAGLQQQQSWVMAQPWAVAQPQLQQAGVGAWAQLG
QGCSPWSHQAWAQPQPEQQQARLYTAEGGPAGYRTKWEELHPVSQHLLLQIEDKIRDERH
ACEQVEQCRRLSDPSVSKNCFELDARQITQEIGLISAIMDREKALIQSLMADVREIMSHV
DFAICAYAKVRRSLVSGGAGLAYSAGSFDGESSCAPTDFSRHSTMARTFRNCYDSVYRPS
LFMQHIVERFEKQLEECCKLIGELEQLVQTKNDKTHPATLGSLPKVISNVHDYFIYVASK
VENLHQHAETIRTQYLNDLRNSGNWNDPFAEADRKEAAKQEAAARIVHPTLPVTNDDTRS
RHQMCN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggctggacggcaacaccgacctggacggcgtcgccaggcgcctcagcttctcc
tccgcctccccggggcagctcccgccccggtcgccacggaggcagccggccctcccgccg
atcgccgaggacccaggggagcagcaggcatcggcgggggcgacgacgccctcgtccacg
cctcgcgcgacgacgcgcgggaggttcacggtctacacggaggcgccgccgtccgcaccg
cacacgcaggcgccccccgcgcctcccgcggcgtcggcgtcgacgtcgacgtcgccgctc
gagacgcagcaggcggtcgcggccgcgctggggcacttggagcagcaacgccaggccggg
ctgcagcaggcgtcggtggcggcgcagcagcagcaggcgtttgtggccgcgtacgaggga
tgggagcggaggcgtcaggcggggctgcagcagcagcagtcgtgggtgatggcgcagccg
tgggcggtcgcgcagccgcagctgcagcaggcgggggtgggggcgtgggcgcaattgggg
cagggttgttcaccgtggtcgcatcaggcgtgggcgcagccgcagccggagcagcagcag
gcgaggctgtacacggcggaagggggcccggcggggtacaggaccaagtgggaggagctc
catccggtgtcgcagcaccttctcctgcaaatcgaggacaagataagggatgagaggcat
gcgtgtgagcaggtggaacaatgcaggcgcctcagtgacccgtcagtctccaaaaactgt
tttgaactggatgctcgtcagattacccaggagattgggttaatctccgccatcatggac
agggagaaggctctcattcagagcttaatggctgatgtcagagaaataatgtcgcatgtg
gattttgctatatgtgcatatgcaaaagtgagacgaagtttagtcagcggaggtgctgga
ctcgcatattctgctggatcttttgacggtgaatcttcatgcgctcctactgatttcagc
cggcactcgacaatggcccgaacctttcgtaactgctatgattctgtatatcggccttct
ctctttatgcaacacattgttgaaagatttgagaagcagcttgaagaatgttgcaaattg
attggagagctagagcagcttgttcaaacgaagaatgataaaacccatccagctactttg
ggatctctgccaaaagttatatcaaatgttcatgactattttatctatgttgcttctaag
gtggaaaatcttcatcaacatgcggaaacaataagaactcaatatcttaatgatctgcga
aacagtggtaactggaatgatccatttgcagaagcagatagaaaagaggcagcgaaacaa
gaagctgctgccagaatagtccatccaacattgcctgtaactaatgacgacacccgaagc
aggcaccagatgtgtaattga
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