Hordeum vulgare subsp. vulgare (domesticated barley): 123398305
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Entry
123398305 CDS
T11213
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123398305
09123 Folding, sorting and degradation
03018 RNA degradation
123398305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123398305
03041 Spliceosome [BR:
hvg03041
]
123398305
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123398305
mRNA cycle factors
Stress granule specific factors
123398305
Spliceosome [BR:
hvg03041
]
Complex C
Other components
Complex C specific factors
123398305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_Nup35
HobA
Motif
Other DBs
NCBI-GeneID:
123398305
NCBI-ProteinID:
XP_044948718
UniProt:
A0A8I6XXA7
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All DBs
Position
5H:complement(350829445..350834219)
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AA seq
651 aa
AA seq
DB search
MAAQAASSASEGGSPAAAAAAAAAAASSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVS
VRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTA
NIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL
NGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV
VVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKF
EKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVA
FKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ
MLPPGVPVGQQMFYGQPPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQR
PAGRRAGAGGMQQSMQMGQQQMMGRGGGRGYRYPTGRGMPDPAMHGVGGVMTSPYEMGGM
PMRDAGASQPVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQ
TEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLNDGLISS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaggcggcgagctcggcgtcggagggcggctccccggccgcggcggccgct
gcggctgcggcggcggcgtcgtcgttcccggccacgtcgctgtacgtgggcgacctagac
gtgagcgtgcaggacgcgcagctcttcgacgtcttcgcccagatcggcggcgtcgtgtcc
gtgcgtgtctgcagggacgtcacctcgcggaagtcgctcggatacgcctacgtcaactac
aacaccccagccgacgctgcacgggctcttgaaatgctcaacttcactcctatcaacggg
aggcctatcaggataatgtattctaaccgtgaccccagcttgcgcaagagtggcacagca
aatatatttattaagaatcttgacaagtcaattgacaacaaagctttgcatgacacattt
tgtgtgtttggaaacattctttcatgtaaagttgcaacagatcctgctggggaatcaaag
ggctatggctttgttcagtatgagcgggatgaggctgctcatgctgctattgagaaactc
aatgggatgcttatgaatgacaagaaggtttatgttgggccttttgttcgtaagcaggag
agagataactctccaggcagtgtcaagttcaataatgtctatgtaaagaacctagctgag
actaccactgaagatgacttgaaggaaatcttcgggaagtttggaacaataacaagtgtt
gttgtaatgcgggatggggatggaagatccaagtgttttggatttgtgaactttgaaagt
ccagatgaagctgctctggctgttcaagatttgaatggcaagaaatttagtgacaaggaa
tggtacgttggaagagcgcagaagaagtcggaaagggagatggagttgaaggagaagttt
gaaaagaaccttcaagaggcagcagataagtatcaaaacaccaacttgtatctgaagaac
ttagatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactatt
acttcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgct
tttaaatctgctgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggc
aataaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcag
gcacagttttcacaaatgcgtcctgttccaatggctcaaactgttggtcctcgtatgcaa
atgttacctcctggtgttccggttggtcagcaaatgttttatggccagccaccagcgttt
attaacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggccaggt
ggtgctccgatgccaaactttatgatgcctatggttcagcaaggacaacaaccacaacgc
ccagctggtaggcgagctggtgctgggggaatgcagcaatccatgcagatgggtcagcag
cagatgatgggtaggggtggtggtcgtggttaccgctatccaactgggcgtggcatgcct
gatcctgctatgcatggtgttgggggtgtgatgacatccccatatgagatgggaggcatg
cctatgagagatgccggtgcgtcacagccagttccaattggggcattggcttctgcactt
gccaattcacccccagagacgcaaagaatgatgcttggcgagaacttgtaccctcttgtt
gatcagctggagcacgaccaggctgccaaggttactggcatgcttctggagatggaccag
accgaggtgcttcacctgcttgagtcgccagacgctctcaaggccaaggttgctgaagcc
atggaggttctccgcagcgctcagcagcacaccaaccagtcccccgagcagcagctggct
tcgctttcgttgaatgacggcctcatctcttcctga
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