Hordeum vulgare subsp. vulgare (domesticated barley): 123398565
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Entry
123398565 CDS
T11213
Name
(RefSeq) nuclear pore complex protein NUP58-like
KO
K14307
nucleoporin p58/p45
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123398565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123398565
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123398565
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
TFIIA
Motif
Other DBs
NCBI-GeneID:
123398565
NCBI-ProteinID:
XP_044948960
UniProt:
A0A8I6YHD3
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Position
5H:complement(457716880..457722779)
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AA seq
501 aa
AA seq
DB search
MAFSFSSPAQQNPFQTPTQQNPFQTPAPQNPFQTPAPAQTQAPAQSPSPFQFNFQQPQQQ
QQQQQQQQQQQQQQQQQQQQQQAAATAQPQQQQQQQQQLMLYTKEGKPAGYNTKWDELHA
DSQKALLQIEDKIREYKDESERLDQCSRLHDSSISNVNFELDASHIAQELAGTATVIERE
KASVQELMTVVNEMMWNTEFAIRSYMMLRPRFLKSATGSSNPSGPAGVLPNQPGPTNDFY
SGVPKRPSLFMLQTVNKFEKYLDECCKWITELEQLVQIENNKRSSSSVESLPKVMSNVHD
YFIYVASKVENLHQYVVSMKTEYLHGQRRLGNANDPFLEANRREAAKEEAAAKRVHPTLH
LPAPAQPTTQTAAPATSQPQQSLLPSGGTSSSALAAFSMPASAPSTSSLFSTPTTSSLTT
NLFGTTGSAQLSTPFGTSSTPTLGSTPTPSGFGGGISPSFPSTPALTGTSLFSTPFGGGA
TASGSSFGGTSKGRSKARGRR
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcgttctccttctcctcgccggcgcagcagaaccctttccagacgccaacgcagcag
aatccgttccaaaccccagccccgcagaacccgtttcagactccggcgccggcgcagact
caggcgccggcgcagtcgccttcgccgttccagtttaacttccagcaaccccagcagcag
cagcaacaacagcagcagcagcagcagcagcagcagcaacaacaacagcagcagcagcag
caacaggccgcggcgacggcgcagcctcagcagcagcagcagcagcagcagcagctgatg
ctgtatacaaaggaggggaagcccgcagggtacaacacgaagtgggacgagctccacgcc
gactcgcagaaggcgctgcttcagatcgaggataaaatacgggagtacaaggacgagagt
gaaaggttggatcagtgcagccgccttcatgactcctcaatctcaaatgtcaattttgag
ctcgatgcaagtcacattgctcaggaacttgcagggactgcaaccgtaattgagagagag
aaggcatctgttcaagagttgatgactgttgttaatgaaatgatgtggaacacagaattt
gctattcgctcatatatgatgttgagaccaaggttcctcaaatcagccactggttcttca
aatccttctgggcctgctggagttctgcccaatcagcctggaccaaccaatgatttctat
agtggcgtcccaaagaggccttccctttttatgctgcaaactgtcaacaagtttgagaag
tatcttgatgaatgctgcaagtggattactgaactagagcagctggttcaaatcgagaat
aataaaagatcatcatcttctgtggaatctctgccaaaagttatgtcgaatgtgcatgac
tatttcatctatgttgcttcaaaggtggaaaatcttcatcagtatgttgtgtcgatgaaa
actgaatatctacatggtcagcgccgtttgggcaatgcaaatgatccatttctagaggca
aatagaagagaagcagccaaagaagaagcagctgccaaaagagtccatccaacattgcat
ctgcctgctcctgcacagcccacaacacaaactgctgcaccagcaacaagccaaccacag
caatctttgctcccttctggaggaacttcctcgagtgcccttgcagcttttagcatgccg
gcttctgctccatccacttcgagtctcttttcaacaccaacaacttcaagtctcacaact
aaccttttcggtacaactggatcagcccagctgtccacaccatttgggacatcctccact
cctacacttggatcaacaccaactccgtctggatttggtgggggtattagcccatctttt
ccttcaacgcctgctttaactggaacttcactattctctacaccatttggaggcggggct
acagcttcagggtccagctttggcggcacatctaaggggaggtcaaaggcccgaggccgg
cgctag
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