Hordeum vulgare subsp. vulgare (domesticated barley): 123399216
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Entry
123399216 CDS
T11213
Name
(RefSeq) LOW QUALITY PROTEIN: cyclin-T1-4-like
KO
K15188
cyclin T
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123399216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123399216
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Super elongation complex (SEC)
123399216
Brd4/P-TEFb complex
123399216
7SK RNP complex
123399216
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GFIT
Motif
Pfam:
Cyclin_N
CycT2-like_C
Cyclin_C
Cyclin_C_2
Motif
Other DBs
NCBI-GeneID:
123399216
NCBI-ProteinID:
XP_044949579
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Position
5H:254855780..254863921
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AA seq
590 aa
AA seq
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MAMLPSDSSHHRIVENSPYRITKSGNKKAGKLSASWYFSRKEIEENSPSKRDGIDLKKET
YLRKSYCTYLQDLGMRLKVPQVTIATSIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVE
ETPRPLKDVILVSYELIHKKDPAAGQKIKQREVYDRQKELILLGERVVLATLGFDLNVHH
PYKPLVETIKKFKITHNALPQVAWNFVNDGLRTSLCLQFKPHLIAAGALFLAGKFLKVKF
LPDDGEKAWYQEFDVTPRQLEEVSNQMLELYEQNRVVQSQPTNGSEAEGSSAGVPNQRIS
VKTAANSEEPPVVHHPASKQSDSSASTPTGVPIHNGAERSKPHKHIGSHRSLQNDNGDHE
NDKISSQSGGRVDTSTKDGLHDGTKSLPISSRPSDKPGTPTEEEKPLPAHASSSESRDGN
LTNSGDPSVSSSMMDAMNKIDKDKVKAALEKRRNSKGYVARKVDVMDDDDLLERELEHGV
ELAVEDEKIKQERDHCSVHQEDHRNADDVAENGDNNGEQNVRETAKEAEVLVNIKDERSP
TXRNDAFEHKPQHPSDTPKHSVSHHGAQLVGRHENIKCLDLKVDGPELMF
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggctatgctgccaagtgattcttcacatcacagaattgtagaaaatagcccctacaga
atcacaaagagtgggaataagaaagctggcaaacttagtgcttcatggtatttcagtaga
aaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaagagact
taccttcggaaatcgtattgcacttatctacaagatttggggatgcggctcaaagtgcca
caagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatctcat
gcaaaaaatgatagacgaacaatcgctactgtttgcatgttcttggctggaaaagtcgaa
gaaacacctaggcctttgaaggatgtcatcctggtttcttatgagcttattcataaaaag
gatcctgctgctggtcagaaaatcaagcagagggaagtatatgatcggcaaaaggaactc
attttacttggggagcgagttgtacttgcaacacttggttttgaccttaatgtgcaccat
ccttacaagcccttggttgaaacaataaaaaaattcaagattactcataatgcgcttcct
caggttgcctggaattttgtcaatgatgggctgcgcacttcactctgtctgcaattcaag
ccccatcttattgcagcaggtgctctctttttggctggtaagtttctcaaagtgaaattt
cttccagatgacggtgagaaggcttggtatcaggagtttgatgtgacaccaagacagctg
gaagaggttagcaatcaaatgttagagctgtatgagcaaaaccgtgttgtacagtcacaa
ccaacaaatgggagtgaagctgaaggtagctcagctggtgtgcctaatcaaaggatctcc
gtaaaaacagcagccaactctgaggaacctcctgttgtgcatcatccagcatccaaacag
tcagattccagtgcttctacaccaacaggtgttccaattcataatggtgctgagcgctca
aagccacacaagcatattggtagccacagaagtcttcaaaatgacaatggtgaccatgaa
aacgacaaaataagtagtcagagtggaggtagagttgatactagtacaaaggatggtttg
catgatggcacaaagtccttgccgataagttcgaggcccagcgacaaacctggtactcca
acagaagaagagaagcctcttccagcgcatgctagttccagtgaatcgagagatggtaat
ctcactaacagtggtgatcccagtgtctcatcctccatgatggatgccatgaataaaatt
gacaaggacaaggtaaaggcagctttggagaagcgaagaaattcgaagggttatgttgct
aggaaggtagatgtgatggatgatgacgacctacttgagagggaattagaacatggtgtg
gagttggctgttgaggatgagaagatcaagcaggagagggaccattgtagtgtgcatcaa
gaggatcaccgtaatgctgatgacgttgcagaaaatggggacaataatggcgagcagaat
gttcgagagactgcaaaagaggctgaggttctggtgaacattaaagatgagcggtctcca
accnnaagaaatgatgctttcgagcacaagccgcagcatcctagtgatacgccaaagcac
agcgtgagccaccatggtgctcagcttgttggtagacatgaaaacataaaatgcctcgac
ctgaaggttgatgggccagaattgatgttctag
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