Hordeum vulgare subsp. vulgare (domesticated barley): 123399608
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Entry
123399608 CDS
T11213
Name
(RefSeq) RNA-binding KH domain-containing protein RCF3-like isoform X1
KO
K21444
poly(rC)-binding protein 3/4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123399608
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
123399608
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_Vigilin
Motif
Other DBs
NCBI-GeneID:
123399608
NCBI-ProteinID:
XP_044949940
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All DBs
Position
5H:484001352..484008882
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AA seq
633 aa
AA seq
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MEISPTSAPAGAAGAAAPATPASSSNHPPPAKRPSITLRLLCPSSRAADLHPARDLHVEH
PPVGDEAVLVVSGPDAPAAAVRVWERVVGHRVGGDEAGEGEEEKEVAGVVGCRMLAAGGQ
VGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCALQGDELIHISGSFSAARKALLLVS
TCLQDNPRPDTSNFPSGRPFGPPGSGVGCPPGVDPHSQRSYLPPPHVPDYHARNFSSNGA
APGPRFFVEQEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIV
ISARENSEMMRSPSQDALLRVYSKISEASMDKSSSVPARLLVPAQHIGCLLGKGGSIIAE
MRKLTGASIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDLIIPPKPHPS
GGMPPYPPVGNPSHHQSRQEAPSHHSGGMPPYPMHPFRPNPPMGPFDVADPRPPGPPPSH
PMEHMGADRMPYPYGCEQGGPRPFVEQPSPRTWAPEVPYHVQAPATDAPRSMPDTVPAVD
FRKGPVSSSENQVATPATTTTEVVIPCKYIGFVCGTNGSDLDEIKKISGAAITVHDPKPG
DTNSTVIICGDPEQTKKAQSLIHAFIFCGLYQK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaaatctcccccacctccgccccggccggcgccgccggcgcggccgcacccgcaacc
cccgcctcctcctcaaatcaccccccgccggcgaagcgccccagcatcacgctccgcctc
ctctgcccctccagccgtgccgctgacctccatcctgcgcgcgacctccacgtggagcac
ccccccgtgggggacgaggccgtgctcgtcgtatccgggccggatgcgccggccgcggcc
gtgagggtgtgggagcgggtggtggggcacagggtcgggggcgacgaggcgggggaggga
gaggaggagaaggaggtggccggagtcgtgggctgccggatgctggcggccggggggcag
gtgggctgcgtgctggggaagggcgggaagacggtcgagcggatgcggcaggagagcggc
gcccagatcagggtcttccggaacagggagcaggtgcccccctgcgccttgcagggggac
gagctcatccatataagtgggagcttttctgcagcaaggaaagcgcttttattagtttca
acctgcctccaagataatcctaggccagacacaagcaattttccatctggaagaccattc
gggcctccaggcagtggagttggttgtccacctggtgtggatcctcattctcaaagaagc
tatttaccaccaccacatgttcctgactatcatgcaaggaatttttcaagcaatggtgct
gcccctggtcctagattctttgttgaacaagagatagtgttcagaatgatatgtttaaat
gatatggtgggcggcgtaattggaaaaggcggttccactatccgcgcattacagagtgaa
actggtgcttcagttaaggttatagaccctgttgctgattcggatgagcgtataattgtg
atatctgcgcgtgagaattctgagatgatgcgttctccatctcaggacgcattgcttcgg
gtatattctaaaatctcggaggcatctatggataaaagttcttctgtacctgcaaggctt
cttgttccagcgcagcatattggttgcctacttggcaaaggtggatccataattgcagag
atgaggaagctaacaggagccagcatccgaatttttgggaatgaacaaattccaagatgt
gcacaacgaaatgatgagctggttcaggtcactggtagcttccagtccatccaagatgca
ttgcttcatatcactggaaggattagagatctcatcattcccccgaagccacatcctagt
ggaggcatgcctccgtatccacctgttgggaacccttcccatcaccagtcaagacaagaa
gctccatcacatcacagtggaggcatgcctccctatcctatgcatcctttcagacctaat
cctcctatgggtccttttgatgtggcagatcctcgaccacctggcccacctccttcacat
ccaatggaacacatgggtgctgataggatgccctacccatatggttgtgaacaaggaggt
cctcgtccttttgttgagcagccatcaccaagaacctgggctcctgaggtcccttatcat
gtgcaggcaccagcaactgacgctccaagaagcatgcctgacacagtaccagctgtagat
ttcagaaaggggccagtgtcaagcagtgaaaaccaagtggctacaccagcaactacaaca
actgaagttgttattccttgcaagtacataggttttgtttgtggaaccaatggcagtgac
ctcgacgagataaaaaagatatccggcgctgcaattacagtacatgatccaaagcctgga
gatacaaattcgacagttattatatgcggagaccccgaacaaactaagaaggcgcagagc
ctgattcatgctttcattttttgtggtctgtaccaaaaatga
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