Hordeum vulgare subsp. vulgare (domesticated barley): 123399707
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Entry
123399707 CDS
T11213
Name
(RefSeq) E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8-like isoform X1
KO
K22651
E3 ubiquitin-protein ligase RNF4 [EC:
2.3.2.27
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hvg04121
]
123399707
Enzymes [BR:
hvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123399707
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123399707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-rbx1
zf-RING_10
zf-RING_6
RING_XB3-XBAT31
zf-RING_4
Prok-RING_4
Zn_ribbon_6
Sina_RING
zf-Nse
zf-P11
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
123399707
NCBI-ProteinID:
XP_044950032
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All DBs
Position
5H:complement(485544399..485547685)
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AA seq
339 aa
AA seq
DB search
MDRHRSLYSPTENSTTRHAGNGPPKRGRGPTQAWAEIAGPDRRGPNGEETYLPFYRETSS
PPPFRILSVQNRKRRGDGEEEEDWRRRRAKKKKIECAGRRRGAARRPPPPLVRSSSVRRS
QVDSGAEGSMSTPNGTRRASRRQSQDADKVVVNLVTSPPAAGSRRGVSASNAGARTSPID
VEALEDEVQVVSASQVPQRTNRRTRRQPVTVVDLEAHVTREGVTHDDNATVLSHNTRNKR
QRVAPVVNISPETGEGSSLQSKSAGKTSKEPVKVTPKEPIFTCPVCWNKLDEPATTMCGH
IFCTNCIKQAIQFQKKCPTCRKHLKMNNFHRIYLPNTAR
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtcaccgctccctctactctcccaccgaaaactcgacgacccgtcacgctgga
aacgggcccccaaaaagaggcagaggccccacacaggcgtgggccgagatagcgggccct
gacaggcggggcccaaatggggaagagacgtatcttcctttttatcgcgagacctcgtct
cctcccccatttcgcatcctttccgttcaaaacaggaagcgcaggggagacggggaggag
gaggaggactggaggaggcgccgagcgaagaagaaaaaaatcgagtgcgcgggccggcgg
cgcggcgcggcgcggcggccgcctcctccgctcgtccggtcgagctcggttcgtcggtct
caggtcgattcgggagctgaagggagcatgagtactcctaacggcacacggcgtgcctca
cgaaggcaatcacaagatgccgataaggttgtcgtgaacctggtcacaagccccccagcg
gcgggcagccgacgtggagtatcagcctctaacgctggcgcgcgcacctcacccatcgat
gtggaagcgctcgaggatgaagtgcaggtcgtgtcagcttcgcaagtgcctcagaggacg
aaccggagaactaggaggcagcctgtgacagtagttgatctagaggcacatgttacccgg
gaaggagttactcatgatgataatgcaacagtgctttctcataacacaaggaacaaacgg
caaagagttgcacctgtagtaaacatctctccagaaacaggagaaggatccagcttacag
tcaaaaagtgcggggaaaactagcaaagagcctgtgaaggtgactccaaaggaacccatc
ttcacctgcccggtgtgttggaacaagctggacgagcccgccacaacaatgtgcggccac
atcttctgcacaaactgcatcaagcaagccattcagttccagaagaaatgccctacctgc
cggaagcacctgaagatgaacaacttccaccgcatttaccttcctaacaccgctcgttaa
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