Hordeum vulgare subsp. vulgare (domesticated barley): 123399853
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Entry
123399853 CDS
T11213
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123399853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123399853
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123399853
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123399853
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
123399853
NCBI-ProteinID:
XP_044950170
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Position
5H:490805002..490814032
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AA seq
629 aa
AA seq
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MSGLLNSNLNSSASNLPDSTGRPFATSFSGQSGSVQGFHHSGLRNIHGNFSLPNMPGSLA
QRNAVMSGLPSSGVQQPGGSISGRFASNNLPVAMSQIPHAHSGVSGRGMNVGGGQSFSSG
MNMGGTIKGLYSNLGTSGNRNSVPGMSVSATLGNLGPRITNSAGNIVGGSNIGRNISSGG
LSVPSISSRIDFSSNAGSGRLNVQGSNRMTSGLIPQGSSQLMNMLGSSYPTPGGSLSQNQ
MQPGNNSLGSMGMLHDASDSAPFDINDFPQLTGRPNSAGGSQGQYGSLRKQLNQEFSIQS
EDFPALPGFKGSSSDYAMELHHKEQLHENVPVMQAQQYPMARSVGFNLGSSYQPNRQQHQ
QGANSIQSAGPQNIGLRPLNTPSQTSSLGSYEQLLQQYQQPLAQGPFGLQQMSSATQSYG
DLGLKPILGGRTPPDPYSLLGLLGVIRMNDPDLSSLALGIDLTTLGLDLNSQDNLYKTFG
SPFSNEPAKGDPEYTTPACYVAEQPPALQPMHFQKFQTLILFYIFYSMPKDEAQICAANE
LYNRGWFYHKEAQQWFTRIPNMEPLLKTPTYEQGSYAFFHQGNWETVRKDNFVLHYELVE
KRPSLPSASQTVRHLPTLAFLYMNGEPSL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcttgctgaattcaaatcttaacagttccgcatcgaatcttccagactcaacc
ggacgaccatttgcaacatccttttctggtcaatctggatcagttcaaggtttccatcac
tcaggtctgcgcaacattcatggaaatttcagtcttccaaatatgcctggatcacttgca
caaaggaatgctgtgatgagcggccttccatcctccggggttcaacaacctggagggagc
atttctgggagatttgcttcaaacaaccttccagttgccatgtctcagattcctcatgca
cattcaggtgtcagtggtagaggaatgaatgttggtggaggtcaatcatttagtagtggc
atgaatatgggtggtaccattaaaggtttatactcaaatttgggcaccagtggtaaccga
aattctgttcctggcatgtcagtgtctgccactttaggaaacttgggtccacgtattaca
aactctgcaggaaacatcgtgggcggaagtaacattggaagaaatataagctctggtgga
ttgtcggtgccgagtatctcatcacgcatcgattttagtagcaatgctggaagtgggaga
ctaaatgtgcaaggatccaacaggatgacaagtggccttattccgcaaggatcatcacaa
ctaatgaatatgcttggaagttcatacccaacgcctggaggttccttgtcccagaatcaa
atgcaaccaggaaataattctctaggttctatggggatgctacatgacgccagtgacagt
gctccatttgacatcaatgatttcccccaattgactggtcgacctaattcagctggtggt
tcacaaggacaatatggatcactacggaagcaactaaaccaggagttcagtattcagagc
gaagatttcccggctttgccaggatttaaaggtagcagttcagattatgctatggagtta
catcacaaggaacaacttcacgagaatgtacctgtaatgcaagcacaacaatatcctatg
gcaaggtctgttgggtttaatttaggaagtagctaccaaccaaatcgtcagcaacatcag
cagggtgctaattcaattcagagtgccggaccccaaaatattggactaagaccactaaac
actccgagtcaaacttctagtttgggatcatatgagcaactgctccagcaataccagcag
ccgctggctcagggtcctttcgggttgcagcagatgtcttcggccacacagtcatatggg
gatcttggtctaaagcccattctgggaggccgaacaccacctgatccatacagcttgtta
ggattgctgggagttataaggatgaatgatcctgatttgtcatctcttgctttgggaata
gatttgacaactttgggtttggatttgaactcccaagacaatctgtacaagacatttggc
tctccattttcaaatgagccagcaaaaggagatcctgaatatactactccagcttgttat
gtggctgagcaacccccggcactacagcctatgcattttcagaaatttcagacactcata
ctattttacatattctacagcatgcctaaggatgaagctcaaatatgtgctgccaatgaa
ctatataatcgtggatggttttaccataaagaagcgcagcaatggttcaccagaattcct
aacatggagcctcttctcaaaactcctacatatgaacaggggtcttatgccttctttcat
caaggcaattgggaaacagtccgtaaggataactttgttctccattatgagctagtagag
aaaaggccaagtctcccttccgcgtcccaaactgtcaggcacctcccgactctagctttc
ttgtacatgaatggagaaccttctttataa
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