Hordeum vulgare subsp. vulgare (domesticated barley): 123400110
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Entry
123400110 CDS
T11213
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123400110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123400110
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
123400110
Prokaryotic type
Archaeal type
TFB
123400110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
Zn_ribbon_3
WHD_GDS1
DUF7573
RB_B
Zn_ribbon_LysW
Motif
Other DBs
NCBI-GeneID:
123400110
NCBI-ProteinID:
XP_044950456
UniProt:
F2ECG8
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All DBs
Position
5H:502215190..502219238
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AA seq
312 aa
AA seq
DB search
MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG
GPSNPLLTDGGLSTVIAKPNGAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG
LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEEL
DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNSY
AKEEDLKNLCTP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgtactgcccggactgcaagaagcacacggaggtggccttcgaccactcg
gcgggggacacggtgtgcaccgagtgcggcctcgtcctcgaggcgcactccgtcgacgag
acctccgagtggcggaccttcgccaacgagtccaacgacaacgaccccgtccgtgtcggc
gggccctccaacccgctcctcaccgacgggggcctctccaccgtcatcgccaagcccaac
ggcgcccacggcgacttcctctcctcctccctcggccgctggcagaaccgggggtccaac
cccgaccgctccctcatcctcgccttccgcaccatcgcaaacatggcagacaggctgggt
cttgtggctactattaaggaccgagccaatgaaatctataagaaggtggaagatctcaag
tctatcaggggtagaaatcaagatgctatattagctgcttgtctttatattgcttgtaga
caagaagatcgtcctaggactgtaaaagaaatttgctcagttgccaatggagcaacaaag
aaagagattggtcgagcaaaagagttcatcgtgaaacagctggaagttgaaatgggccaa
tctatggagatgggaaccatccatgctggagatttcctgaggcgtttctgctcaactctt
ggtatgaacaatactgctgttaaagcagctcaggaggcagttcagcgctcagaggagctt
gatataaggaggagccctatttcaattgcggctgctgtcatttatatgataacccagctt
tcagaggacaaaaagccgcttaaagatatctccttggccaccggagtggcagaaggcacc
atcaggaattcgtacaaggacctgtacccctacgctgcgaggctcatcccgaactcgtac
gccaaggaggaagacctgaagaacctgtgcacaccatag
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