Hordeum vulgare subsp. vulgare (domesticated barley): 123401043
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Entry
123401043 CDS
T11213
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
123401043
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hvg04040
]
123401043
Ion channels [BR:
hvg04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
123401043
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Motif
Pfam:
Ion_trans
cNMP_binding
DUF6525
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
123401043
NCBI-ProteinID:
XP_044950693
UniProt:
A0A287UUI0
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Position
6H:complement(518901538..518913246)
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AA seq
773 aa
AA seq
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MSDQERDDIPMLLRNVELPRFPRSTSMCMPVRDEDYEEDTYVPHTGPLSSQPPSQVAAAG
NPFVVSRHTPDNKLPRHPQPKQVSKPQAIAPVEVGGNRWSHAGDIPKNEHLMMSGPLGQC
DNPDCVHCPPACKNKRLFQRAPNPFDNKLHNILYGHHHGWKKSIERFLSYIPIMNPHAKV
VQQWNQFFVISCLVAIFIDPLFFFLLSVEKDNKCIVFNWKLATGLAVVRSVSDAIYFLHM
LLQFRLAYVAPESRVVGAGDLVDEPKKIAVHYLRGYFLLDFFVVLPLPQVIILAIIPRSF
GLSTTADDAKNYLRVIILLQYVPRIIRFVPLLGGRQSATGFIFESAWANFVINLLMFVLA
GHVVGSCWYLFGLQRVNQCLQNACSASNISSCKVFRDCGLDFNVGGQNEQIRQQWSDEPA
STACFDPGNDTNFQYGIYQQAVLLATKRSAVTRYIYSLFWGFQQISTLAGNLVPSYFEGE
VLFTMAIVGLGLLLFALLIGNMQNFLQALGSRKLEMQLRRRDVEQWMSHRRLPEDLRRRV
RHAERFTWAATQGVNEEELLSNLPEDIQRDIRRHFFRFLNKVRLFTLMDWPILDAICDKL
RQNLYISGSDILYQGGPVDKMIFIVRGKLESISADGSRAPLQDGDVCGEELLTWYLEHSS
TNKDGGKSRFHGMRLVAIRTVRCLTNVEAFVLRASDLEQVTAQFARFLRNPRVQGAIRYE
SPYWRTIAAARIQVAWRYRKRRLKRAERSRPSEEHECLPDTRSHYAFQPGQRG
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcaggagagggatgatatcccaatgctgttaagaaatgttgagctaccaaga
tttcccagaagtacgtccatgtgtatgccggtcagggacgaggattatgaagaagacact
tatgtgccccataccggtcctctgtccagtcagccaccgagccaggttgcagcagcgggc
aatccgtttgttgttagcaggcacacaccggataataagctgccgcgacacccacagccg
aaacaagtcagcaaaccacaggccatcgcgccagtagaagtcgggggaaacaggtggtct
catgctggagatattccaaagaatgaacatttgatgatgtctggacctttgggacaatgt
gataatccagactgtgtccattgccctcctgcgtgcaaaaacaagaggcttttccagcga
gctccgaatccttttgacaataagcttcataatattctctatggacaccatcatgggtgg
aagaagagcattgagcgtttcctttcgtacattccgattatgaacccacatgcgaaggtt
gttcaacaatggaatcaattctttgtgatatcatgtctggttgctatcttcatcgatccc
ctgtttttcttcctattgtcagtagagaaggataacaaatgcatagtattcaactggaag
ttggcgacagggcttgccgttgtgagaagtgtttctgatgctatttattttctgcacatg
cttcttcagttcagactggcttatgtagctccagagtcaagagtagtgggagctggagat
ttagttgacgagccaaagaaaatagctgttcattatcttcgtggttattttttacttgat
ttcttcgttgtgcttccactccctcaggtgattatattggcgattatccctagatctttt
ggcttatcaacaacagcagatgatgccaagaattatttgcgtgtcattattcttcttcaa
tatgtcccccgcatcatcagatttgtaccattgcttggtggtcgccagtctgccactgga
ttcatatttgagtcagcatgggctaattttgttattaatcttctaatgtttgttttggcg
ggacatgtcgtcggttcatgctggtatctttttggattacagagggttaaccaatgccta
caaaatgcttgttctgcgtcaaacatttcatcgtgtaaggttttccgagactgtggactc
gactttaatgttggagggcagaatgagcaaattagacagcaatggtctgatgagccagcc
tcaacagcttgtttcgaccccgggaatgatactaatttccagtatgggatttatcagcaa
gctgtcctgctggctacgaaacgcagtgctgttacacgttacatatattcattattttgg
ggatttcagcaaatcagcactttggctggaaatcttgtcccaagttacttcgaaggggaa
gtcctcttcactatggctattgttggtttgggactgttgctttttgcactactaatcggg
aacatgcaaaattttctccaagctcttggaagccggaaactagagatgcaacttagacgg
cgtgatgttgagcagtggatgagccatagacgactgcctgaagatctgagaaggagggtt
agacatgcagaaaggttcacctgggcggccactcaaggagtaaatgaagaggagctctta
agtaatttaccagaagatattcaaagggacatacgccgacatttctttagattccttaac
aaggttcgattgttcaccttgatggattggcctatcttggatgctatctgtgacaaatta
agacaaaatttatatatcagtggaagtgacattctttatcaaggtggccctgtcgacaaa
atgatcttcatagttagaggcaagctagaaagcatcagtgcagatggaagcagggctcca
ttacaagatggagatgtatgtggagaggaactcctcacatggtacttggaacactcttca
acgaataaagatggcgggaaaagtagatttcatggtatgcgtttggttgctatacgtact
gtgcgatgcttaacgaatgttgaagcttttgtacttagagcaagtgatcttgaacaagtt
actgcacaatttgcacggttcttgcgcaatccaagagtgcagggggcaatcaggtatgaa
tcaccctactggaggaccattgctgcagcgcgcatccaagtcgcatggaggtatcgtaag
agacgactaaagcgagctgaaagatcaaggccgagtgaagaacacgaatgtttaccggat
acacggtctcattatgcctttcagcctggacagagggggtga
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