Hordeum vulgare subsp. vulgare (domesticated barley): 123401073
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Entry
123401073 CDS
T11213
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03430
Mismatch repair
hvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123401073
03460 Fanconi anemia pathway
123401073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123401073
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
123401073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
123401073
NCBI-ProteinID:
XP_044950722
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Position
6H:complement(322941346..322947787)
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AA seq
953 aa
AA seq
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MGGASPAIKPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVGLKAYGEEWFK
VADNGSGISPSNFQALALKHHTSKISDFSDLNSVVTFGFRGEALSSLCALGKLTVETRTK
DELVGTHLEFEHSGVVSSERKIARQVGTTVTIEKLFSTLPVRGKEFSRNIKKEYGKVISL
LHAYALIAKGVRLLCTNTVGKNSKMVVVKTQGSSSLKDNIVTVFGLNTLKCLEPFNLALS
EGCQVEGFLSKPGPGTGRNSGDRQFFYVNGRPVDMPKVTKLVNELYRSSNSRQYPLAVLN
FCIPTTSYDVNVAPDKRKIFFSSEDTILLSLREAIESLYNPQQCSFSINHIEDPEKVNHT
EDPVKEDDPTIDEPIKSTYLMDKENVSSPENDNCKEDTDSDDQDPPKDQKVFSSATRVAT
GAACRDMSPWTRSPDTEVDRPPWFSALRYEQPKRPRADCKSNPVRENHVRTGLAAQSSPS
TIVQSSLMNFLSLNKRKHEDSCNLITEAQVLRRGTCSGQVRRTSLEANAPGISDAISLQE
ISLWDHSPQPFVPKRTEVPLQNSEPPNLVSRSTEPHLLKPCDLNSTEFDVDERNDRCLPN
FDASDQCLKDTEAQNTPSNIPLLDGHDNDTSVCSTSVSYSVQFTIDELRRRRKHSFIVSH
VNRAHCSEKTARCYKAATLDNYVPNDEEGKSNYLAAATNELDRFFSKDNFGEMKVVGQFN
LGFIIGKLEQDLFIVDQHAADEKYNFESLSQSTTLNIQPLLQPLRLELSPEEEVIVSMHM
NTIRKNGFVLAEDLHASPGSHYLLKAVPFSKNITFGVQDVKELICMLSDSQGDCSIISSY
KMDKTDSVCPSRVRAMFASRACRMSTMIGDPLTKTEMKKILKNLTGLRSPWNCPHGRPTM
RHLADLTSMKSKGHLMLSQKQIEAVLRSSMAQKEATSIDAHEDFIDNSLGLRE
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgggaggagcctcgccggcgataaagcctatcggcaaatcagcggtgcaccggatttgc
tccggccaagtcatcttcgacctctcgtccgcagtgaaggagctcgtggagaacagcctc
gacgccggcgccaccaccgtcgaggtcggcctcaaggcctacggtgaggagtggttcaag
gtcgccgataacggcagcggcatctcgcccagcaatttccaggcgcttgctctaaagcat
cacacgtccaagatatcggatttctccgatctcaactccgtggtcaccttcgggttccgg
ggggaggcgttgagctccctctgtgcattggggaaactgacggtcgagacaaggactaaa
gatgagttggtcggcacacatttggagtttgagcattcgggtgtggtcagcagtgagagg
aagattgcacggcaagtcgggaccaccgtaaccatcgagaaactcttctccaccttgccg
gttcggggcaaggagtttagcaggaatatcaagaaggagtacgggaaagtgatctccttg
ctacatgcttatgccttaattgccaaaggggtcagattactttgcacaaatactgttggc
aagaattctaaaatggtggtggttaaaactcaaggaagcagttcgctgaaggacaatatc
gttacggtctttggcttgaacactttaaaatgcctggagcccttcaacctggccctctct
gaaggctgccaggtagaaggttttctttccaagcctggaccaggcaccggccgcaattca
ggagatagacaattcttctatgtaaatggcagacccgtcgacatgccaaaggtaaccaaa
cttgttaatgaactgtacaggagttccaattccaggcaataccctctggctgtcctaaat
ttttgcatcccaaccacatcttatgatgtcaatgtcgcacctgataagaggaaaattttc
ttctcatccgaggatactattttgttatctttacgggaggctattgaaagcctgtacaac
cctcaacagtgcagtttttccatcaatcacattgaagatcctgaaaaggtcaatcacact
gaagatcctgtaaaggaagatgaccctacgattgatgaacctattaaaagcacatattta
atggacaaggagaatgtttcatcgcctgaaaatgataactgcaaggaagacactgatagt
gatgatcaggacccaccgaaggatcagaaagtgttttcttctgcgacaagggtagccact
ggagctgcatgtagagacatgagcccctggacaagaagcccagacactgaggttgataga
cccccttggttttcagccttgcgatatgagcagccaaaaagaccccgtgctgattgtaaa
agtaatccagtaagagaaaatcatgttaggacaggacttgctgctcaatcctccccttca
actattgttcagtcttctcttatgaacttcctatcactaaacaagaggaagcatgaagac
agttgcaatcttattactgaagctcaagtgctgagaaggggtacatgctcagggcaagtg
agaagaacaagtttagaagcaaatgcaccgggtatttcagatgccatctcacttcaggaa
attagtctgtgggatcattctccacaaccttttgtacctaagaggacagaagttccatta
cagaattctgaaccacctaatcttgtgtctcgtagtactgaaccgcatctccttaagccc
tgtgacctcaacagtacagagtttgatgtggatgaacggaatgatcgatgccttccaaat
tttgatgcttccgaccaatgtttgaaggatactgaagcccaaaatacaccgtccaatatt
cctttacttgatggtcatgataatgacacttcagtgtgctctacatcagtatcttattca
gtgcagtttacaattgatgagcttaggagaagaagaaaacacagttttattgtatcacat
gtaaacagagcccattgttctgagaaaactgcaaggtgttataaagccgcaaccctggat
aattatgtaccaaatgacgaagagggaaaatctaattatttagctgcagccaccaatgag
ttggacaggtttttcagcaaagataattttggagaaatgaaggttgttgggcagtttaat
ctcggttttatcatcggaaagctagaacaagacctatttattgtagatcagcatgctgct
gatgagaagtacaactttgagagcctgtcacagtcaacaacgttaaacatacagcctctt
cttcagccactgagacttgaactttcaccggaggaagaagttatcgtatctatgcacatg
aacactatcagaaaaaatggttttgttttagcagaagatttgcatgcttctcctggaagt
cattatcttttgaaagctgtgccgtttagtaagaatattacgtttggtgttcaagatgtg
aaggagctgatttgcatgctttctgacagtcaaggtgactgttcaataattagtagctat
aagatggataaaactgattctgtttgcccttcgagggtccgtgctatgtttgcttcgagg
gcttgccgaatgtctactatgattggtgatccgctgacgaaaaccgaaatgaagaagata
ctgaaaaatctaacagggctaaggtccccttggaattgcccgcacgggaggccaacaatg
cggcatcttgcagatctgactagtatgaagtccaaaggacatctcatgctttcacagaag
caaattgaagcagtgctgagaagttccatggcacaaaaggaagcaacatccattgacgct
catgaggattttatcgacaactccttgggtttgcgggaataa
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