Hordeum vulgare subsp. vulgare (domesticated barley): 123401262
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Entry
123401262 CDS
T11213
Name
(RefSeq) uncharacterized protein LOC123401262 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123401262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123401262
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123401262
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123401262
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123401262
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Torus
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
123401262
NCBI-ProteinID:
XP_044950948
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Position
6H:101319612..101341467
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AA seq
525 aa
AA seq
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MHDPKARCAADAALQSVGWIWVETFSERKFQGKHKFLSAQTLASPSHLPSIQMDGGDCGL
RFDFEDYLDAVGAGSGSASSEAPILAVGGPSRGCGLQMDGDEDNLRFDFEDDLDAAGAGT
GHSVGYFEALIPAAGGPSHGPGIGSFQMDGDEGSLRFDFEDYLDAVGAGSGSMSASSEAP
IPVTKGLSHGHRRVIFQQTVCQHWLRGLCKKAEPCSFLHQFDMDHMPVCHFHHAFRFCCA
EDCNLKHEIQVCEIIHSSIVLLIAGLLHDILVHNHICSKVCARFSVGFCPNGPNCNYMHV
RLPGPPPPVQEVLQKFQQTNAYNCGPSSGTYQPRDNNCKQKAKAQVQHGSVLNNQNLAVN
ATLVAQQPAAQHAQTANPAPHLQQKQNAHVQGFHNGSSIKKLPQLQAHFHKGNQGTRLLK
VATRRIWILVQWGVCASQKGLMRLNLTKHLSLWRVSFQYSPSLELTISRMIRTPRSDRLE
RCSHLDGPCYGFSPGMKLRTITKLAISLASPLYLLTSSFLSYFAM
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgcacgatccgaaggctcgctgcgcggccgacgcagcgcttcaatcagtcggctggatc
tgggtcgaaacgttttccgagcgaaaatttcagggcaagcacaaatttctcagcgcccaa
accctagctagcccctcccaccttccctcgatccaaatggacggcggcgactgcggcctc
cgcttcgacttcgaggactacctcgacgccgtcggcgctggatccggctccgcgtcctcc
gaagcccccatcctcgccgtgggagggccgtcccgtggctgtggcctccaaatggatggc
gatgaggacaacctccgcttcgacttcgaggacgacctcgacgcggccggtgctggcacc
ggacactcggtcggctacttcgaagccctcatccccgccgctggagggccgtcccatggc
cctggcatcggaagcttccaaatggacggcgacgagggcagcctccgcttcgacttcgag
gactacctcgacgccgtcggcgctggatccggctccatgtccgcgtcctccgaagccccc
atcccggtcacgaaagggctgtcccatggccatcgccgcgtaatcttccagcagaccgtg
tgccagcactggctgcgtgggctttgcaagaaagcggagccgtgctcgttcctgcaccag
tttgacatggatcacatgccagtgtgccacttccaccatgctttccgcttctgctgcgca
gaggattgcaacttgaagcatgagatccaggtgtgcgaaatcattcattcttctatagtg
cttctgattgcgggtttgcttcatgatatattggtccataatcatatctgctccaaagtt
tgtgccaggtttagcgtgggcttttgccctaatggacctaattgcaactacatgcatgtt
aggctacctgggccacctcctcctgttcaagaagtcctccagaagtttcaacagacgaat
gcctacaactgtggtccatcaagcggaacttatcagcctagagacaataactgtaagcag
aaggcgaaagctcaagtccagcatgggtcagtgctgaataatcaaaatttggctgtaaat
gctactcttgtagcgcaacaacctgctgcgcaacatgcgcagacagcaaatccagcacca
cacctacagcagaagcaaaatgctcatgttcaaggtttccataatggctcatctatcaaa
aagctaccacaactgcaagcccacttccacaagggcaatcaaggtactcggttattaaaa
gttgcaaccaggagaatctggattttggttcagtggggtgtttgtgcctcccaaaaagga
ttaatgaggttgaacttgacgaagcatttgagtctatggagagtgtcatttcaatattct
ccatctctagaactcaccatttccagaatgatacgcactcctcggtcagataggcttgaa
cgatgctcccatctggacggcccctgttatggattttctccaggcatgaagctgaggaca
ataaccaaattagcaataagtctggcatcccccctatatctactaacatctagttttcta
tcgtattttgctatgtag
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