KEGG   Hordeum vulgare subsp. vulgare (domesticated barley): 123401596
Entry
123401596         CDS       T11213                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
hvg  Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123401596
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hvg03021]
    123401596
Enzymes [BR:hvg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     123401596
Transcription machinery [BR:hvg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     123401596
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 123401596
NCBI-ProteinID: XP_044951357
LinkDB
Position
6H:complement(72017907..72042356)
AA seq 1971 aa
MEEEDQSSVLVAEGAIKSIKLSLSTENEICTYSINDCPVTHPSQLGNPFLGLPLETGKCE
SCGATENGKCEGHFGFIELPVPVYHPCHVSELRQLLSMVCLQCLRIKKGKVKQTNGKENF
SVTACHYCRGLPALYLKEIKTADGAFRLELRAPPKKHMTERSWDFLGKYGFRYGGASHSR
TLLPEEALNILKKIPDDTKKKLAARGYIAQPGYVMKYLPVPPNCLYIPEFTDGQSIMSYD
ISISLLKKILQKIEQIKKSRSGSPNFESNDSESTDLQLSIGQYIQLRGTTKGPQDAKRFS
VSTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGADVVGLPSEVAKRITFEEQ
VTDTNLNRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNR
PPSTHKHSLQAFTVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFS
VEKQLTNSHNGKVNLQLANDSLLALKHMSSRTMLSKESANQLAMLLSLSLPAPAVVKSKP
CWTITQIMQSALPAELTCEGDRFLVRDSTVIKLDLDKESIQASFSELVSSILAVKGPGDA
LKFLNALQPFLMEFLLLDGFSVSLQDFSVPKPLLEEAQECIKKQSLVLEQSRCSNSQSVE
VRVDNNLKDVKQQIADFVVKSSRLGLLIDPKSDPSVSKVVQQLAFVGPQLYREGKFYSRR
LVDDCFSSFVNRHPPIEDGVQHPPEAYGLVQSAYFHGLNPYEELVHSICTRETIVRSSRG
LTEPGTLFKSLMAILRDVVICYDGTVRNICSNSIMQLKYKEEDDTDFPSAIAPGEPVGVL
AATAISNPAYKAVLDASQSNNTSWELMKEILKTKVSYKNDAKDRKVILFLNDCSCPKKFC
KEKAAIAVQGCLKRVTLEDCATDICIEYHKQVSLAATSEAIPAFVGHIHLEKAYLEKINV
SIDEILHKCQEVSGKHANKKGTLGHLFKKITFSTCDCSFTQKPGDEKVPCLQFSFSEDIP
MLSDSVEKAVNVLADSLCSVLLEIIIKGDPRVQEAKITWVGSDATSWVKHTKKISKGEPA
VEIIVEKKEAMQNGDAWRIAMDACIPVMNLIDTQRSIPYGIQQVRELLGISCSFDQVVQR
LSKTMKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYKATFRSLKVQVPFTEATLLTPM
KCFEKAAEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYGDGLYDFLA
LVRTDQEKAAYTFLDDVDYLVEDNAMDDFCLSPELDGTHGMPTFEDNPEEQTTENGSSWE
NGTTANANAGNDSGNWGGGPAVENDSTDWAGWGNDKKTVSVEPAEPDTWADQGAKKDTEG
GWSNAAAKPAEQDKSCWNAPPTVENNSSDWAGWGTGNANDRNIVSEGPAEVDTWADQSGK
RDTDGGGASWDKMKVKDNNMQQDQWGHVPTQNVDAQDDPWGSVAAVAQPSTAKHMDANND
SWGSVAAKAQTSTAEHMDANNDSWGSVAAKTSTAEPMDTKDDSWGSVAAKASIAEPMDAG
NDSWGSVAAKAQTSTAQQESWGNVSASPSDNAWGAAPVSQGPDNSDAKQPDSWDGWGSAP
PVSQGPDNSDAKQPDSWDGWGSAQANESSTDKWKTNASGNNKGWKSDGWEAKENRRDQRD
NPGRPPMRPPVERPPRPRYELPAEAKKVLQEIEPIVTTVRKIFRESSDGIRLPLEDEKFI
IEKVLEHHPEKEKKVSGEIDHIMVNKHHIFQDSRCFYVVSSDGTQTDFSYIKCMDNYVRK
NHEEHAELICEMHFKKRNRDRPPVVDGGAAPPTEAGASQPTPGERLEAALPGPPPGTPPP
SAITQQEGTPASPGATPEDDLPLPPPPPPPLTQRGDGTPEDDLPLPPPPPLTQRGDGTPE
DDLPLPPPPPLPQQEAETPGSAPEAGGADDKWGAGGADDEWGAGGADDKWV
NT seq 5916 nt   +upstreamnt  +downstreamnt
atggaggaggaggaccaatcgtcagtgctggttgctgaaggcgccatcaagagcataaag
cttagcctgtccaccgagaatgagatatgtacctattctataaatgactgtcctgttact
catcctagtcagcttgggaatcctttccttggcttaccactggaaacaggcaaatgcgag
tcatgtggtgccacagaaaacggcaaatgcgaaggccattttgggttcattgagctgcct
gtacctgtatatcatccgtgtcatgtcagtgaacttaggcaactactgagcatggtatgt
ctgcagtgccttcgtatcaagaaaggaaaggtcaaacagaccaacggaaaggaaaatttt
tcagtaacggcttgtcactactgtcggggtctcccggcactatatttgaaggaaatcaag
acagcagatggtgcatttcgtttagagttgagagcacccccaaagaaacacatgacagaa
cgctcctgggacttccttggcaagtatgggtttcgctatggtggagcctcccactctagg
acattgcttccagaagaggctcttaatatattaaagaagattccagatgacacgaaaaaa
aagctagctgcacgaggatacattgctcagcctggatatgtgatgaaatatcttccagta
ccgcctaactgcctctatatcccagaattcacagatgggcagagcatcatgtcctatgat
atttctatatctttgttgaaaaagatacttcaaaagatagagcagataaaaaaatcaaga
tctggttccccaaactttgaatcaaatgattccgaatcaaccgatctgcaactttctatc
ggccaatatatacagctcaggggtactacaaagggtcctcaagacgcaaagagattttca
gttagcactgattcatctcatttgtcaacaaaacaatggcttgaaaagatgaggacattg
ttcatcagcaaagggtcaggattttcatcacgcagtgtacttactggagacccgtatatt
ggagcagatgttgttggactgccttctgaagtggcaaaaagaattacttttgaagaacag
gttacggataccaatctaaacagattgcaagaggttgttgacaagggattgtgtttgact
tatagagatggtcaaacaacatatgcaatcactgtaggatcaaaaggatataccactctt
aaagtgggtcaaacgatcagtagaagaatcgttgatggtgatgttgttttccttaacagg
ccacctagtactcacaagcattctctccaggcatttactgtatacatccacgatgatcat
acagtcaaaatcaacccccttatatgctctcctcttgcagcagattttgatggtgattgt
gtgcatatttattatcctcagtcacttgctgctaaagctgaagcattggagcttttcagc
gtggagaagcagctgactaattcacacaacggaaaagtaaatctccagctagcgaatgac
agcttgcttgctctgaaacacatgtcttcgagaaccatgttaagcaaagaatcagcaaac
cagttggcaatgctcctgtcgctttctcttcctgctcctgcggtggtcaagtctaagcca
tgctggacaatcacacaaataatgcaaagtgcgttgccagcagaattgacttgtgaaggg
gatagattcctagttagggacagcactgtcataaaactggatcttgacaaagaatccatt
caggcctcgttttcagagttggtgtcctccattcttgctgttaagggaccaggagacgcg
ctcaagtttttaaatgcgctgcaaccctttctgatggaattcttgcttctggatggcttt
agtgtaagcctgcaagattttagtgtacccaagcctctgttggaagaagcacaggagtgt
atcaaaaagcagtctcttgtactggagcagtcaaggtgctcaaatagccagtctgtggaa
gtaagagttgacaacaatctgaaggacgtcaaacaacaaattgcagattttgtcgtgaaa
tcctctcgtcttggtcttctcattgacccaaagagtgacccctcagtgtcaaaagttgtt
caacagcttgcttttgttggtccgcagctctaccgcgaggggaagttctactcaaggcgt
ctggtggacgattgcttctcaagttttgtcaatagacacccaccgattgaagatggagtt
caacacccaccagaggcgtatggtcttgtgcaaagtgcatatttccatggtctcaatcct
tatgaggagctagtacattcgatatgtacaagagaaactattgtccgctcctcaagaggg
ttgacagaaccaggaactctgttcaagagtctaatggccatcttgcgagatgtagttata
tgctatgatggaaccgtgagaaacatctgcagcaattcaatcatgcagctgaaatacaaa
gaagaagatgacacagattttccaagtgctatagctcctggagaaccggtgggtgtctta
gctgccactgctatctccaaccccgcttataaggctgtcttggatgcttctcagagtaat
aatacttcatgggagttgatgaaggaaatacttaaaacaaaagttagctataaaaatgat
gcgaaggatcgaaaagttatcctgttcctgaatgactgctcttgccccaagaaattttgc
aaagagaaggctgctattgcagtgcagggttgcctaaagagagtcacactagaggattgt
gccactgatatctgcatcgagtatcataaacaagttagtttagctgcaacttcagaagcc
atcccagcatttgttggccatattcatcttgaaaaggcatatttagagaagataaacgtt
agcattgatgagattcttcataaatgccaagaagtttctgggaaacatgcgaataagaaa
ggaactcttggtcacctgtttaaaaagattactttctctacttgtgattgttcatttacg
cagaagccgggtgatgagaaggttccatgtttgcagttctctttttctgaggacatccct
atgttatctgattccgttgagaaagcagtgaatgtgttagccgactctctctgtagtgtg
cttctggagataatcataaaaggtgatcctcgagttcaagaggctaaaattacgtgggtt
gggtctgatgcaacgtcttgggttaaacatacaaagaagatatcaaagggtgagccagca
gtagaaattattgttgagaaaaaggaagctatgcagaacggtgatgcatggagaatagcg
atggatgcatgtataccagtcatgaacctcattgacacacaaaggtcaataccttatggt
attcagcaagtgcgagaacttcttggcatatcatgctcctttgatcaagttgttcagcgc
ctttcgaaaactatgaagacggttgctaaaggaattctgaaggaccatttggttcttgtg
gcaaacagcatgacatgcactgggaacttgaatgggttccacaatggtggttacaaggcg
accttccgttcattaaaagttcaagtaccttttacagaggcaaccttgcttacccctatg
aaatgcttcgagaaggctgccgagaaatgccattctgattcattgggctctgtggtctca
tcatgttcatggggcaagcatgcagcacttggtactgggtcatcttttcagattctttgg
aatgaaaatcagctgaaaagcaacaaggagtatggtgatggcctgtatgatttcctggcc
ttggtgaggaccgaccaagaaaaggctgcttacacattcttggacgatgtggactacctt
gttgaagacaacgcgatggatgatttttgcttatcaccggaattggatgggacccatggt
atgcccacttttgaagataatcctgaagagcaaactactgaaaatggcagctcatgggaa
aatggcacaacggcgaatgcaaatgctgggaatgattctggtaactggggaggaggccca
gcagtggagaatgattccactgattgggcaggctggggcaatgacaaaaagactgtatcc
gtagaaccagccgaacccgatacttgggctgaccagggtgctaaaaaggatacggaagga
ggctggagtaatgcagctgcaaaaccagcagagcaagacaagtcatgttggaatgcaccc
ccaacagtggagaataattcatcagactgggcaggctggggcactggaaacgcaaatgac
agaaatattgtatctgaaggaccagctgaagtcgatacttgggctgatcagagtggtaaa
agggatactgatggaggtggtgctagctgggacaaaatgaaagtgaaggataacaatatg
cagcaagaccaatggggtcatgtgccaacccagaatgttgacgcacaggatgatccatgg
ggaagtgtggcagctgtggctcaaccttccaccgcaaagcatatggatgcaaataatgat
tcctgggggagtgtggcagcgaaagctcaaacttctactgcagagcatatggatgcaaat
aatgattcctggggaagtgtggcagctaaaacttctactgcagagcctatggacacaaag
gatgattcctggggaagtgtggcagctaaagcttctatcgcagagcctatggacgcaggg
aatgattcctgggggagtgtggcagcaaaggctcagacttctactgcacagcaggagtcc
tggggtaatgtttctgcttcaccatcagataatgcgtggggtgctgctccagtttcccag
ggacccgataattcagatgcaaagcagccagattcttgggatggctggggttctgctcct
ccagtttcccagggaccagataattcagatgcaaagcagccagattcttgggatggctgg
ggttctgctcaagccaatgagtcgagtactgataaatggaagaccaatgcttctggcaac
aacaaaggctggaaatcagatggatgggaggccaaagaaaaccggagggaccaaagagac
aatccaggcaggcccccaatgagacctcctgttgagaggccaccaagaccacggtatgaa
ctgccagctgaggcgaaaaaggttctacaagaaattgaacccattgtaacaacggtcaga
aagatcttccgtgaatcaagtgatggcataaggcttcccctggaggacgaaaagtttatc
atagaaaaagttctggagcaccaccctgaaaaggaaaagaaggtgtctggtgaaattgat
catataatggtgaacaagcaccacattttccaggacagccgatgcttctacgtggtgtca
tcagatgggacccaaacagacttctcctacatcaagtgcatggacaactacgtgaggaag
aaccacgaggagcacgccgagctcatctgcgagatgcacttcaagaagcgcaaccgcgat
cgaccaccagtggtcgatggaggtgcggcaccacccactgaagccggggcgtctcagccg
actccgggcgagcgcttggaagccgctctgccaggcccgccgccaggaaccccacctcct
tcagcaatcacccagcaggaggggactccagcttctccgggtgcgactccagaagatgat
ctgcctctgcctcctccccctccccctccactgacccagcgtggggatggaacaccagaa
gatgatctgcctctgcctcctccccctccactgacccagcgtggggatggaacaccagaa
gatgatctgcctctgcctcctcctcctccactgccccagcaggaggctgagacgccaggt
tcagcgccagaggcaggaggcgccgatgacaagtggggggcgggaggtgccgatgatgag
tggggggcgggaggcgccgacgacaagtgggtctag

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