Hordeum vulgare subsp. vulgare (domesticated barley): 123402944
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Entry
123402944 CDS
T11213
Name
(RefSeq) histone deacetylase 6
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03082
ATP-dependent chromatin remodeling
hvg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123402944
03083 Polycomb repressive complex
123402944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hvg03036
]
123402944
Enzymes [BR:
hvg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
123402944
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
123402944
HDAC complexes
Sin3A-HDAC complex
123402944
BRAF-HDAC complex
123402944
REST complex
123402944
SHIP complex
123402944
MiDAC complex
123402944
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
123402944
Heterochromatin formation proteins
Other heterochromatin formation proteins
123402944
Chromatin remodeling factors
NuRD complex
123402944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
123402944
NCBI-ProteinID:
XP_044952849
UniProt:
F2E712
LinkDB
All DBs
Position
6H:187845694..187849625
Genome browser
AA seq
458 aa
AA seq
DB search
MAASGEGASLPSPAGGEDGRRRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLVIHYGL
HRLLELSRPFPASEADISRFHSDEYVSFLASATGNPTILDPRAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH
RRVLYIDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAGEGKHYAVNVP
LSDGIDDDTFRDLFQCIIKRVMDVYQPEVVVLQCGADSLAGDRLGCFNLSVKGHADCLRF
LRSFNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIQP
RIVENLNTTKDLENIKNMILDHLSKLENVPNAQFHERPSDPEGPEEKEEDMDKRPAQRSR
LWSGGAYDSDTEDPDNMKIEDNNLSANSIMKDASNDDL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtccggcgagggagcgtcgctgccgtctccggcaggcggcgaggacggccgc
cgccgtcgtgtgagctacttctacgagcccacgatcggcgactactactacgggcagggc
cacccgatgaagccccaccgcatccgcatggcgcactcgctggttatccactatggtctg
caccgcctgctcgagctctcgcgccccttccctgcctcggaagccgacatcagccgcttc
cactccgatgaatatgtctccttccttgcctccgcgaccggcaacccgaccatcctcgac
ccccgcgccgtcaagcgcttcaacgtcggggaggactgccccgtctttgacggactcttc
cccttctgccaggcctccgccggtggcagcatcggcgccgccgtcaagctcaaccgtggt
gacgccgacatcaccgtgaactgggccggcgggctccaccacgccaagaagggcgaggcc
tctgggttctgctatgtcaatgacatcgtcctcgccattctcgagcttctcaagttccac
aggcgtgtgctatatatagacattgatgtccaccacggagatggtgtggaggaggccttc
ttcactacaaacagagtcatgacggtttctttccacaagtatggagacttctttcctgga
actgggcatataactgatgttggagcgggtgaagggaaacattatgctgtaaatgtcccc
ttgagtgatggcattgatgatgacaccttccgtgatctgtttcaatgcatcattaaaaga
gtaatggatgtttatcagccagaggtagttgttctccagtgtggggccgactctttggct
ggagataggttaggctgcttcaatctgtctgtgaaaggccatgcagactgcctccgtttt
ctcaggtcattcaatgttcctatgatggttttgggaggtggaggttacacaatcagaaat
gttgctcgctgttggtgctatgagactgcagttgctgttggcgttgaacctgataacaag
ttgccttataatgactactacgagtactttggccctgactataatcttcatattcaacca
agaattgtggaaaatctgaatactacaaaagacttggagaatataaagaacatgatattg
gatcatctttcaaaattagaaaatgtcccaaacgctcaattccatgaaagaccatcagat
cctgaaggtccagaagagaaggaggaagatatggacaagagaccagctcagcgcagcaga
ttatggagtggaggagcttatgattctgacacagaagatcctgacaacatgaaaatcgag
gataacaacttatctgccaactctatcatgaaggatgcatcaaatgatgatttgtag
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