Hordeum vulgare subsp. vulgare (domesticated barley): 123403914
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Entry
123403914 CDS
T11213
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hvg03036
]
123403914
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Meiosis-specific proteins
Others
123403914
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
SHOC1_N
SHOC1_HhH_tandem
SHOC1_ATPase
ZIP2_M
Motif
Other DBs
NCBI-GeneID:
123403914
NCBI-ProteinID:
XP_044953760
UniProt:
A0A8I6YDW6
LinkDB
All DBs
Position
6H:complement(395662092..395669706)
Genome browser
AA seq
1707 aa
AA seq
DB search
MRTRFLATDYFSPAPAASCSDQALALASLRFPPLPVPSLPADPRFPYPLPFPAAADLPAV
SVTGGGLDCLPISSALSEFLAAVIPQALPVPTPPAADEGLDDFLYDRGVYSKGFNSRESV
ASKIPDGLDEISREKEGEGDGSKSMSDRSGTYTDTKRWELLKEHIFEVAEVDLPQVLEGP
VASFGGDESGDGVKIHGPDVKIHLDFIDIDTEMTLRYPTELAESIYQVEKIPVKHNDEED
LLSARNSNFPAIAALDCGVAIPQLEVSRHSWELNECPTKAEVSNIFHNIVEHLGGAQVQH
PVLNSTEFLRSTDIDMLAFVSKDAPCPDYQAGESMTVNAAVQMDLVRVNDNLLLERNSAL
YPLKPDGTISDLPYSVLLEEVQIIDSPSEDVFRMLVQSDAAELNTSDEIFKDDFYQARRS
YESVVSSELVLVDDTFISLPTPILTDEDMTLRSMVPPMGEILYSLKPHSLSAADRIYLDW
HLLLEGPCNREICSTYASMVEEVKGCQLNSELQVSCQQTPALGFDFLEYFWRSAKHQDED
KQNNICVPIPVPHDPPAVVKTAQEYRQESDTGDHGCMEKSSSEKATSLFQSMSQSSELNF
YLNVRSSTKRGTSAQNNSTFDIPTLNEAVSFPSRPKVDKLIEIHSVSLPDSIRVLIKHIH
TSYTSALQESAYLRYTFSDGHGLSISKQKLLGLITGGGSDGLDSRCKHEDKIELIVLYGL
KQVAYYLCFFGLHAAHLYMNNLIGSFENIPERLKNSHCFIDEALWKAEKHQIDSHPSLHD
IEMILRSNTRISQKILVVADRAFWLPLGKKLTSMKMTFVELGKDPAASYLDPVNRTNPTT
WVLGGLPKSDCILLDNKNIPASFPFSEFGIILEYGGPNKSSTLLSLAPKLNGFPPLHFLY
VKLDVEDPSVALVEDNPTDEELKATMDLVLHALKKDLQEKMNKMRIVDSLNFVPATTQLQ
ERHENLCKHLTADSTKNLPADDQLLKLENLEKKNIVNAHNVVPAAEQWHIEEMLSKRTVL
HSRHFVPALEKSSLTSSVSANVIKAPQDNLSATDLPSNVKVGSIIPGRLSNPVIVVNTGS
HGKNMIFSRRSSYQQILSLEKGGMQVVERDIDLPVDLILSASVCLVWFETKIFGSNEFTA
STETSSIPNFVETIATNILMSISFCFCGCIMVFEGEPHSLSAVMESSDSLYAAAASLAMN
LQLFFSHVPKSTDEIIVSCIRNANRLNKAPSPDIPESESLAESFLTKFPSINPLSAYIIL
SCGGSFVEFLGWSYERRIQAAKSYLLSPQSISLFNALCKFGELGDSKSVMTDCSSVDSDI
CSALLQSPRKRKRCASRAFAVPPSDRLHPDPLNRLPGNYVEHNVFSQPKSRRCSDVEDAM
PQFPEVFMFDQSLSRGGEGVSCVPRKHDIDAISGNQIMSDHFSNGLTTHMRHYDRRASSM
VDTFDFSWQPESVGKEPIKNSFPPSKPSSSRTYTHPVFPTALEINDDTGDWAIPGGAHHT
GKGGDIASTACRNDMGSRYHEPREGIMQSPGSWLAFLKQDSGFPATSHGLGWEMDYLRQM
NEKRRAGQERSRCSTSAITSNSRMRDGASEIRSPPPIDSFRYRGGRDTPLRDRSPSVGIH
RYGKARGGPKAHTNRGRKDFKMQPSASHENRREPSIDLTWTPIDKRARQKLLFAADGKEK
QSKLIWRDQNSPGIGCGFRKRYREEGT
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgcggactcgcttcctcgccaccgactacttctcgccggcgccagcagcctcctgctcg
gaccaagccctagccctagcgtccttgcgcttccctcctcttcccgtcccctcccttccc
gccgacccgcgtttcccctatcccctccctttccccgccgcggccgacctccctgcagtc
agcgtcaccggcggcggtctcgactgtctccccatatcctccgcgctatccgagttcctc
gcggccgttattccgcaggccctgcctgtgccgactccccccgccgccgacgagggattg
gatgatttcctctacgacaggggcgtgtatagcaagggctttaactcgagggagtctgtt
gcatcaaaaatccctgatggattggacgagattagccgcgagaaggaaggggagggagac
ggatccaaatccatgtcagatagatcggggacctacactgataccaagagatgggaattg
ctgaaggagcatatatttgaggttgcagaggttgatctcccgcaggttttggaaggaccc
gttgcatcctttggtggtgacgagtcgggtgatggtgtgaaaatccatggtccagatgtg
aaaatccacttggatttcattgatattgacactgagatgacattgagatatccaactgaa
cttgcggaatctatttatcaagtagagaaaatccctgtgaagcataatgatgaggaggat
cttttgtccgcaagaaatagtaacttcccagcgattgcagcgttagattgtggtgtagca
ataccacaactggaggttagtaggcattcttgggagcttaatgagtgtcccactaaggca
gaggtatccaatatttttcataacattgttgaacatttgggtggagcacaagttcagcat
ccagtgttaaactcaactgagttcttgagatcaactgatattgacatgttggcctttgtt
tccaaagatgccccatgtccagactatcaagcaggtgaatcaatgacagtcaatgctgca
gtacaaatggatcttgtgagggtcaatgataatcttctacttgagagaaactcagcatta
taccctctcaagcctgatgggactatttcagacttgccttactcagttcttttagaagaa
gtacagatcattgattctccttcagaggatgtcttcagaatgcttgttcagtcagatgca
gctgagctgaatacatctgatgaaatattcaaagacgacttttatcaagcaagacgttcc
tatgaatcagtggttagctctgagttggtgctggttgacgatacattcatatcactacct
acacctattttaactgatgaagatatgacactgaggtctatggtccccccgatgggagaa
atactttactccctgaaaccacattctctttctgcagccgacagaatttatttggattgg
catcttttattggaaggtccatgcaaccgggagatctgctctacctatgccagcatggtt
gaggaggtaaaaggttgccagttaaactctgagctgcaagtcagttgtcagcagacacca
gcacttggctttgattttcttgagtatttttggagaagtgcaaagcaccaagatgaggac
aaacagaacaatatttgtgttcctatccctgtacctcatgatccacctgctgtagtgaaa
acagctcaggaatacagacaagaaagtgatactggagaccatggttgcatggaaaagtcg
agttcagaaaaggcaacttccttattccagtcaatgtcacaatccagtgaattaaacttc
tacttgaatgtcagaagcagcaccaagagaggaactagtgctcaaaataattctactttc
gatatccctactttaaatgaagcagtttcttttccaagcaggcctaaagttgacaagctc
atagaaattcattctgtcagcctcccagattctatccgagtccttatcaaacacatccat
acaagctatacatctgctttgcaagaaagtgcatatttgaggtatactttctcggatggg
catggtttaagcatttcaaagcagaagcttcttggacttataactggaggaggttcagat
ggccttgatagtcgctgtaaacatgaagataagatagaactcattgtactctatggatta
aaacaggttgcatattatctatgtttcttcggtttgcacgctgcccatctgtacatgaac
aacctgattggaagctttgaaaatattcctgagagattaaaaaatagtcattgtttcatc
gatgaagcactatggaaagcagagaagcatcagattgactctcacccatcattgcatgac
attgagatgatcctgagatctaatacccgtatcagccagaagatccttgtagttgccgat
agagctttctggctgccattgggtaaaaaattaacttcgatgaagatgacatttgttgag
ctaggaaaagaccctgctgcatcttacttagatccagtgaacaggacaaatcctacaact
tgggtgctgggaggattaccaaagtcagactgcattctgctagataataagaacattcca
gcttcattccctttcagcgagtttggcatcatactggaatatggaggtccaaataaatca
tctaccttgttgtctctggctcctaagttaaacggttttccaccattacatttcctctat
gtcaaattggatgttgaagacccttcggttgcacttgttgaggacaaccctacagacgag
gagttgaaagccacaatggatttggttctgcatgcacttaagaaggatctgcaagagaag
atgaacaagatgcgtattgttgattcattgaactttgtaccagcaactactcagctgcaa
gaacggcatgaaaatctgtgcaaacatctcactgctgattcaacaaaaaatttacctgca
gatgatcaactgctcaagctagaaaatttggagaaaaagaatattgtcaatgcacataat
gttgtgcctgcagctgaacagtggcacatagaggaaatgctgagcaaaagaactgttctc
cattcacgacattttgtgcctgcacttgagaagagcagcttgacttcttctgtatctgca
aatgtgataaaagccccacaagacaatctatctgctactgacttgccttccaatgtaaaa
gttggcagcatcattccggggagattatctaacccggtgattgttgtaaatactggaagt
cacggaaagaatatgattttctctcggagatcgtcttatcagcagatactatctttggag
aaaggaggaatgcaggttgtggaacgagatattgatcttcccgtggacctaatactcagt
gcttcagtttgcttagtatggtttgagaccaaaatctttgggagcaatgaattcacagcg
tcaacagagacatctagtataccaaattttgtagagaccatcgcgaccaacattctgatg
tcaattagtttctgtttctgtggttgcataatggtatttgaaggcgaacctcactccctt
tctgctgtaatggagtcatctgattctctatatgctgcagctgctagtctggccatgaac
ttgcagctattcttctcgcacgtgccgaaatcaacagacgagataattgtcagttgcatt
aggaatgcgaataggttgaataaagctccttctccagatatacctgaatcagaaagcttg
gctgaatcatttctcacaaaattcccatcaatcaatcccttgtctgcatacattattctt
tcttgtggaggcagctttgtggagttcctcggttggtcatatgagcgccgtattcaggct
gctaaaagttacctgttgtctccgcagagcatttctctgttcaatgctttgtgcaaattt
ggtgagctaggtgattctaagtctgtaatgaccgattgctcttctgtagattcagacatc
tgtagtgcattgttgcagtctccaaggaaaaggaaaaggtgtgcctcacgagcttttgca
gtaccacctagtgatcgcctccatcccgatcctctaaaccgattgcctggtaactatgta
gaacataatgtgttctcacagcccaagtccaggaggtgctctgatgtggaggatgcaatg
cctcagttcccagaggtctttatgtttgatcaaagtttgagtaggggaggtgaaggggtc
tcttgtgtaccaagaaagcacgatattgatgcaataagtggcaatcagatcatgagtgat
catttcagcaatggtttgactacacatatgaggcattatgaccgaagggcaagcagtatg
gtcgacacattcgacttctcttggcaaccggaatcagtgggtaaagaaccaatcaaaaac
tcttttcccccaagcaaaccatcatccagcagaacttacactcatccagtatttccaact
gcattggagatcaatgatgatactggtgactgggccattccaggaggtgcacatcacaca
gggaagggtggggatattgcctcaactgcttgcagaaatgatatgggcagcagatatcac
gaaccaagagagggaataatgcagagtccaggaagttggcttgcttttctgaaacaggat
tctggctttcctgcaacttcacacggcttaggctgggaaatggattatctaaggcaaatg
aacgagaaaagaagagcgggtcaggagagatcaagatgcagtacatcagcaattacgtcg
aactcaaggatgagggatggagcctctgagattcgaagtcctccacctattgattcattc
agataccgaggaggcagagacactcctttgagggatcggagcccatctgttgggattcac
cgttatgggaaagccagaggaggacctaaagctcataccaataggggaagaaaagatttc
aagatgcaaccaagtgcaagtcatgaaaacaggagggagccgtccattgatcttacatgg
actcccatcgacaagcgagcgagacagaaacttttgtttgcagcagacgggaaggaaaag
caaagcaagctgatctggagagaccaaaacagccctggtattgggtgtggcttccggaaa
agataccgggaagaaggtacgtag
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integrated database retrieval system
