Hordeum vulgare subsp. vulgare (domesticated barley): 123404134
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Entry
123404134 CDS
T11213
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123404134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123404134
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123404134
mRNA degradation factors
5'-3' decay
Decapping complex
123404134
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
ASA1
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_NOL10_N
DSE1_N
Beta-prop_EML_2
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_TEP1_C
DUF445
Motif
Other DBs
NCBI-GeneID:
123404134
NCBI-ProteinID:
XP_044953991
UniProt:
A0A8I6Y4X2
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Position
6H:complement(483858221..483866959)
Genome browser
AA seq
1339 aa
AA seq
DB search
MASPAGNPNPNPGNPNPPFEMAMLFRPPPNPAPTAAPMFPGAAGPPPPSGPYSYPPATPP
FHLRPYLHYPQDPQPPMPRPVIPFPMPNPNANPNPSANPMAAAGANPGARLMQLLGSSGS
GHLESAVSMPPPSSEFAAAQPSPLPAMPSAPPARMLSSTSSKVPRGRLLGGGDKAVHNVD
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDAENKPQITGKIEVAIQIVGD
AEAYHPRICWHSHKQELLFVGIRNCVLRIDTTKVGRGRDFTAEEPIKCHLDDLIDGVRLV
GRHDGDVTDLSISQWMTTRLASGSNDGTVKIWDDRKLAPLSILKPHDGQAVYSVAFLTAP
ERPHHINLITAGPLNREIKIWASTNEEGWLLPSDSESWNCTQTLELVSSLEPKVEEAFFN
QVAVLPQASIILLANAKKNAIYAVHVEYGSDPASTRLDYIADFTVAMPILSLTGTHESQP
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTSDTIALGRDPAISRVYDTPLEVVGAESSTG
TSFTDSSKQSTFDQTSEFDLKPSAPPLAYTEGDGSAHLPSAPLASNTDLTGSGPSVGNRD
KDQSVFDYSTSRITEPVALTRQDTPMPKPLALARQDTPMPKDNFGKGELRDSHSDVQMLP
NPRMMFKVGGNATHLITPSEIISGALSAESNQISKSDGAKIQDDSISSPRIAEVEAKHVD
EIKSDLELEAVKEAQVVHENSEKAQNSLEQTVEMISERSVTTDKYSVEESRSPSGRLVPD
HTGAAGENVQNKTVEKPGTSDYSSSSVSKEQSSSYTKENVFHPQASGQSSPSTSAFNSTE
SSHEPVSSAYPPIESSSEVADMLQQLIAMQKDMHKQLGTIVSAPIAKEGKRIETSLGRTM
EKSIKASIDALWARFLEENTKREKAERERMQQMTTLITNSISKDLPAMLDKLVKREVSSL
GPIVARAMTPIIEKSLTSIVADSVQKAVGDKVVNQLDKSVTAKLEATLARQIQMQFHTSV
KQTLQDVLRTSFESLLVPAFEQSCKTMFEQVDSAFQKGMSEHAVAIQQQVEAAHTPLVLT
LKETIASASSISQNLTSELLDGHRKLLALVTSGNANAQNTNVSQPNNGPITGPPEVEAPL
DPMKELGRLLSEHKFDEAFTVALQRSDVSIVSWLCSQVDLRGLCTMAPVPLNQGVLLALL
QQLAVDIGTETSRKIQWMTDVAMAINPTDQVIAIHVRPIFEQVYAKLAHHRSLPTTSPLD
NSNLRLLMHVINSVLLSYK
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccagccggaaaccctaacccgaaccccggcaaccccaatccccccttcgag
atggccatgctcttcaggccgcctcccaaccccgcgccgacggccgcgcccatgttcccc
ggcgccgccggcccgccgccgccctccggcccttactcctaccccccggccacccctccc
ttccacctccgcccctacctccactacccgcaggatccccagccccccatgccccgcccg
gtcatccccttccccatgccgaacccgaacgcgaaccccaacccgagcgctaaccccatg
gccgccgcgggcgccaacccgggcgcccgcctcatgcagctgctcggcagctccggctcg
ggccacctcgagtccgcggtatctatgcccccgccgtcgtccgagttcgccgccgcgcag
ccgtcgccgctcccggcgatgccatccgcgccgccggcgaggatgctcagcagcaccagc
agcaaggtgccgagagggcggcttctgggtggcggggacaaggcggtgcacaacgttgac
tcgaggctgcctggggaggcgcagcctccacagctggaggtgacgccgatcaccaagtac
acgtcagacccaggtcttgtgctgggcaggcagatcgctgtgaaccggacgtacatcgtg
tatgggctcaagctggggaacatccgtgtgctaaacatcaacaccgcgcttcgctcactg
ctccgtggccatacacagagggtcacggatatggctttcttcgctgaggacgtccatcgt
ttagcaagcgcaagtgtggatggacggatatacgtgtggaggattgatgaggggcccgat
gcagaaaataagccacaaattacaggaaagatagaagttgccatacaaattgtaggtgat
gccgaagcttaccatccaagaatatgttggcactctcataagcaagaacttctgtttgtt
ggaatcagaaactgcgtcttaagaatagatacaactaaagtgggcaggggaagagacttt
accgctgaagaacctatcaaatgtcatcttgatgatcttattgacggtgtacgtttggtt
ggtaggcatgatggtgatgtgacagatttgtctatatctcagtggatgactacccgactg
gcttcaggatcaaatgatggcacggtaaagatttgggatgatcgcaagttagcgcctcta
tcgattctaaagccacatgatggtcaagctgtttactcagttgcctttcttacagcacct
gagcgcccacatcatataaatctcatcacggcaggtcctctaaaccgagaaattaaaatt
tgggcttctactaatgaagaaggttggttgttgccaagcgactctgagagctggaattgc
acccagaccctggaacttgttagttctctggaacctaaagtcgaggaggcatttttcaac
caagttgcagtgctgcctcaagcaagcattatcttacttgcgaatgcaaagaagaatgct
atttatgctgtgcatgttgagtatggctcagaccctgcttctacccgcttggattatatc
gcagattttacagttgcaatgccaattttaagtcttactggcacacatgaaagccaacct
gatggtgagcaggtagttcaagtctattgtgtccaaacaatggccatccagcagtatggg
ctggagttatcactttgttcgcctcctacatctgatactatcgcacttggaagagaccct
gctatttcacgtgtttatgatacacctctggaagtggtaggagcagagtcatccacggga
actagctttacagattcgagtaaacaatcaacttttgatcagacttcagagtttgatctt
aagccatcagctccaccacttgcatacacagaaggtgatggttctgcgcatcttccgtct
gcccctcttgcatcaaacactgatcttactggatcaggaccatcagtaggcaaccgtgac
aaagaccaatcagtttttgattattcgacaagcagaatcactgagccagttgccttgact
aggcaagatacacccatgccaaaaccacttgccctcgctaggcaagatacacccatgcca
aaggacaattttggaaagggtgaattaagagacagccacagtgatgttcaaatgctccca
aatcctcgcatgatgtttaaggtaggaggaaatgctactcatctcataactccatctgaa
attatatcaggcgctctgtctgctgaaagcaatcaaatctctaaatctgatggcgcaaaa
atccaggatgactctattagtagccctcggattgcagaagtggaagcaaaacatgttgat
gagattaaatctgatttggagcttgaagctgtcaaggaagctcaagttgtccatgagaac
tcagagaaagctcaaaattcgttggagcaaactgttgaaatgatcagtgagcgttcagtg
acaactgataagtatagcgtggaagaatcacggtcaccatctggtagactggtccctgac
catactggtgctgctggagaaaatgttcaaaacaaaaccgtggaaaaacctggcacaagt
gattactcctcttcctctgtgtctaaggagcaatcatcttcatataccaaggaaaatgtt
tttcatcctcaagcatctggtcagtcctcaccttctacaagtgcatttaactcaactgag
tcttcgcatgaacctgtcagcagtgcataccctcctattgaatcctcttcagaagttgct
gatatgctgcaacagctaatagccatgcagaaggatatgcacaagcagctaggtactatc
gttagtgctcccattgcgaaggaaggtaaaagaattgaaacatcactaggccgtaccatg
gagaaatctattaaggctagcattgatgccttgtgggctcgtttcctggaggagaacacg
aaacgtgagaaggccgaaagggaacgaatgcagcaaatgaccactctcatcacaaactca
ataagcaaggaccttcctgctatgttggataagttagtaaagagagaagtttcttcactt
ggaccaattgttgcacgggcaatgacacctattattgagaagtccttgacctctatagtt
gctgattcagttcagaaagcggtgggtgataaggtggtgaatcagctggacaaatctgtt
actgcaaaacttgaagctacacttgctaggcagatccaaatgcaatttcatacatctgta
aaacagactcttcaggatgttttacgcactagctttgaatcattgcttgttccagcattt
gaacaatcttgtaagacaatgtttgagcaagtagacagtgcattccagaaaggaatgtct
gagcatgctgttgctattcagcagcaggttgaggcagcacatactccattggtgcttact
ttaaaggaaactattgcttccgcgtcctcaatctcccagaatctcacatcagagttactt
gatgggcatcgcaaacttttagcgctggttacatctggcaacgccaatgcgcaaaataca
aatgtttcgcagcccaataatggtcctatcactggacccccagaggtcgaggcgccatta
gacccgatgaaggagctgggaagactgctatctgaacacaaatttgacgaggcttttaca
gtggcacttcaaagaagtgacgtgtcaattgtgtcttggttatgctctcaggttgatttg
cgtgggttatgtacaatggctccagtccctctgaaccagggagtccttctagccctactg
cagcagctagcagttgatattggcaccgagacgtcccggaaaattcagtggatgacagat
gttgctatggcgatcaatccgacagaccaagtcatcgccatacatgtgaggcccatcttc
gagcaagtctacgccaagttggctcaccaccggtcgctccctaccaccagcccattggat
aacagcaatctccgcttgctcatgcatgtcatcaactcagttctgcttagctacaagtga
DBGET
integrated database retrieval system
