Hordeum vulgare subsp. vulgare (domesticated barley): 123404187
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Entry
123404187 CDS
T11213
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123404187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123404187
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123404187
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123404187
mRNA degradation factors
3'-5' decay
Ski complex
123404187
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
123404187
NCBI-ProteinID:
XP_044954037
UniProt:
A0A8I7BGL9
LinkDB
All DBs
Position
6H:92322804..92348327
Genome browser
AA seq
1367 aa
AA seq
DB search
MDDLTASPASEVPFRISFSGHGGHLRLDPTPHPPNPVPDFVLPPAYPPESPSSVKEYLEA
NYLNPELYVPTAANDGRVWDVDWFDLARPPLEPSAPRTMLVPAWEPPFRRRSLSSSSEQQ
VWDPESVQMEMSQVFDSGNGGMVPRMPGPAKDFVRGRVNSRPFRPGGLQDDAAEAAALEK
AFPEGARNGDWVRELMSGGPALNAPPGFPKGLDLGQLKEYNSHWKCFQDGEHVEEPASSS
NDTTDKYSVQFDDLFKIAWEEDDVNIVPHEDDCELARDEGANDVNERKVDKLQDASETLP
MADTDKLEANIRGDISEAQTDLDKMLSSEVRDTRRETSGLVDDKPAQEGTDWALVVGDNS
IVTNFHKLVPDMAIDYPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASK
HCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEATCLIMTTEILRSMLYRGAD
IIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTKQ
KKIRVTSTNKRPVPLEHCLFYSGEVYKVCEKDIFLTQGFRDAKDAFKMKNANKFGAKPGT
KSGTPAVRAGTQGRNPDTSSKGRDQKLPKHHQTNSGAAAIQQNTSGSRRSESSFWMPLIN
NLLKKSLVPVVIFCFSKNRCDRSADSMFGADLTSNSDKSEIRVFCDKAFSRLKGSDRNLP
QVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFD
TLRKFDGKEHRRLLPGEYIQMAGRAGRRGLDTIGTVIMMCRDEIPEESDLKNLLVGKPTR
LESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKDLPEKEKLLLQMLRQPTKTIEC
IKGEPSIEEYYDMFLEAEEHREFVTEAIMQLHTTQQFLAPGRLVVVKSKSDDDHLLGVIV
KNPSVALKQYVVLVLTCDSTSSALSPNLSSQNEKGPGDSQGYLVILPKGKRGMDDDFFSS
SRTRKSSGVINVKLPYTGDASGMGFEVRAVENKEIISICTSKIKIDQAGLLEDISKTAYS
KTVQMLIKEQPDGKYPPALDAIKDLKMKDMDQVKRYHAHNNLLEEMSKNKCHGCIKLKEH
KILMKDQKVHKDRLDQLKYQMSDEALQQMPQFQGRIDVLKEIHYIDSDLVVQLKGRVACE
MNSGEELISTECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTA
ISLGQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIV
RLDETCREFRNAASIMGNSALYKKMEIASNAIKRDIVFAASLYVTGI
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctcaccgcatcgccggcgagcgaggtgccgttccgcatcagcttctccggc
catggcggccacctccgcctcgaccctaccccccacccgcccaaccccgtgcccgacttc
gtcctgccgccggcctacccgcccgagagtcccagcagcgtgaaggagtacctcgaggct
aattacctcaatcccgagctctacgtccccaccgcggccaatgacggcagggtgtgggat
gtagactggttcgacctagccaggccgcctctggagccctctgccccgcgcaccatgctt
gtgcccgcctgggagccaccttttcgccgaagatcgttgtcctcgtcgtccgagcagcaa
gtttgggaccctgagtctgtgcagatggagatgagccaagtgttcgattcggggaatggg
gggatggtgccacggatgccaggcccggcgaaagactttgtgagggggagagtcaacagc
cggccgttccgcccggggggcctgcaggacgatgcagctgaggcggcagcattggagaag
gcatttccagagggtgcgcgaaatggcgattgggtgcgtgagcttatgagtggtggcccc
gctctaaacgctccgccagggttccccaagggattggacttgggccagttgaaggagtat
aacagccactggaagtgtttccaggacggggagcatgttgaggaacctgcatcttcatca
aatgacacgacggataagtactcggtgcagtttgatgatttgttcaagatagcttgggag
gaagatgatgtcaacattgtgccacatgaagatgattgtgagctggctagagacgaggga
gccaacgatgtcaatgaacgaaaggttgataagttgcaagatgcttctgaaactcttcca
atggcagacactgacaaactggaagctaatatcagaggagatatttctgaagctcaaacg
gacttggacaaaatgttatcatctgaagtgagagatacccgcagagaaacaagtggatta
gttgatgataagccagcacaggagggcacggattgggcacttgttgttggggataattct
attgtgacaaacttccacaaacttgttccggatatggcaattgactatccctttgaattg
gataagttccagaaggaggctatatattatcttgagaagggggaatcagtctttgtggca
gcccatacatcagcaggaaagacggttgttgcagagtatgcctttgctttagcatcaaaa
cattgcaccagggctgtctatactgctcccatcaagactatcagcaaccagaaataccga
gatttctgcggaaagtttgatgtgggacttcttactggagatgttagcatcagaccagag
gcaacttgcttaattatgacaacagaaatattgcgctcaatgctttacagaggtgctgat
attatacgggatattgaatgggtaatttttgatgaagtgcattatgtcaatgatgccgag
aggggcgtagtttgggaggaagttattataatgctcccgaagcacattaacattgtcctc
ctttcagcaacggttccgaatacagttgaatttgctgactggattggccgaacaaaacag
aagaaaattcgtgtcacatcgactaacaaaaggcctgttcccctcgagcattgcctgttc
tactctggagaggtatacaaagtatgtgagaaggatatatttcttactcaaggatttaga
gacgccaaggatgctttcaaaatgaaaaatgcaaataagtttggagctaaacctggaaca
aaatcaggaactcctgcagtacgtgctggaactcaaggcagaaatccagacacttctagt
aaagggagagaccagaagctcccaaagcaccaccaaaccaattcaggagcagcagcaatt
cagcaaaatacctcagggtcaaggagatctgagtcttcgttctggatgccgcttataaat
aaccttttgaagaaatcacttgtgcctgtggtaattttttgcttctcaaagaacaggtgt
gataggtcagcagatagcatgtttggtgctgatctcaccagtaattctgataaaagcgaa
atccgtgtcttctgtgataaggccttttcgcgcctcaaagggtcggacaggaaccttcct
caggttgtaggaatccaaagccttctgcgaagaggaattggagttcaccatgctgggctt
cttcctattgtgaaagaagtagttgagatgctgttttgtcgcggtgtgattaaggtactg
ttttccaccgagacatttgctatgggtgttaatgctcccgcaagaacggttgtgtttgat
actttaaggaagtttgatggaaaggaacatcgaaggttacttccaggggagtatattcaa
atggctggacgagctggtaggagaggactagataccataggtacagtgataatgatgtgc
cgagatgaaattcctgaagaaagtgatttgaaaaatcttcttgttggaaaaccaactcga
ctggaatctcagtttcgactaacatacactatgatactacatcttttacgtgtggaggaa
cttaaggtggaggacatgcttaagagaagtttcgcagaattccatgcacaaaaggatttg
cctgagaaggaaaagctgcttctgcaaatgctacgtcaacctacaaagacaatcgagtgc
ataaaaggagagccttctattgaagaatattatgatatgtttttagaagctgaagaacac
agggaatttgtcacagaagcaattatgcagttgcacactactcagcagttccttgcgcct
ggaagattggtggttgttaaatccaaatctgatgatgatcacttgcttggcgtaatcgtg
aaaaatccatccgttgcactaaagcagtatgttgttcttgtactgacctgcgattccact
tcatctgcactatcccctaatttatccagtcaaaatgagaaggggccaggggattctcaa
ggatatttggttatccttccaaaaggaaaacgtggcatggacgatgattttttctcttcc
tctagaacacgaaaaagttcaggtgttatcaatgtaaagctaccgtacacgggggacgca
tctggaatgggttttgaagtaagagctgtggagaataaagagattattagtatatgtaca
agcaaaataaagatcgatcaagccggactccttgaagacattagcaaaacagcttactct
aaaacagttcaaatgcttattaaagagcagccagatggaaagtaccctcctgcgctggat
gcaataaaagatctaaaaatgaaagacatggatcaagttaaaagatatcatgcacataac
aacctactggaagaaatgtctaaaaataagtgccatggttgtataaaattgaaggaacat
aagatattgatgaaggatcaaaaggtgcacaaggatcggctggatcaactgaaataccaa
atgtcagatgaggcacttcagcagatgccacagtttcaaggcagaattgatgtactaaag
gagatccattacatcgattccgatcttgttgtgcaacttaagggccgagtggcatgtgaa
atgaactctggtgaagagttaatatcaacagagtgtttatttgagaatcagttggatgaa
ttagaacctgaagaagctgtggctattatgtcagcatttgttttccaacaacggaacgcg
tcagaaccatctctcactccgaagctggctgatgccaaaaagaggctctatgacacggca
atcagcttaggacagctccaaaagaggcacgaggtgcctgtggatcctgaggagtatgcg
cgtgataatctcaagtttggtcttgttgaggttgtctacgaatgggcaaagggaacgcct
ttcgcggacatatgtgagctgacagacgtatctgaagggctgattgtacgaacaatcgtg
cggctggatgaaacatgcagggagttcaggaatgccgcctccataatgggtaactctgcg
ctgtacaagaagatggagatcgcgtccaacgccatcaagcgcgacatcgtcttcgcagca
agtttgtatgtcacaggaatatga
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