Hordeum vulgare subsp. vulgare (domesticated barley): 123404423
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Entry
123404423 CDS
T11213
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT2-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
123404423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hvg04121
]
123404423
Enzymes [BR:
hvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123404423
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
123404423
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
Zn_ribbon_6
zf-RING_6
zf-RING_4
YEATS
Motif
Other DBs
NCBI-GeneID:
123404423
NCBI-ProteinID:
XP_044954280
UniProt:
F2DK11
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All DBs
Position
6H:35437803..35441957
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AA seq
311 aa
AA seq
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MAPGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDL
LECPVCTNSMRPPILQCPNGHTICSSCKHRVDNHCPTCRQELGNIRCLALEKVAESIQLP
CKYQSLGCTEIHPYQNKLKHEEICRFRPYSCPYAGSECLIAGDVPMLVSHLINDHKVDLH
EGCTFNHRYVKSNPYEVENATWMLTVFKCFGQHFCLHFEAFLLGMSPVYMAFLRFMGEES
EARGFCYSLEVGGNGRKLTWQGTPRSIRDGHKKVRDSFDGLIIHRNMALFFSSGTRQELK
LRVTGRIWKEQ
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggccccaggaagcagcattgtgagtgtgactgaagttcctgagtcagattgtggcgac
cgtgggctctccgagtcactcagtagtactaggcttgatggagattctacaagtaagccc
tcctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggattgaatgatttg
ctcgagtgtccggtgtgtacaaactcaatgcggccacctatacttcagtgcccaaatggc
cacacaatttgctccagctgtaagcatagggtagacaaccattgccccacttgccgccag
gaattgggaaatatcagatgcttggctctcgagaaggtggccgaatcgatccagcttcca
tgcaagtaccaaagcctgggctgcaccgagatccatccttaccagaacaaacttaagcat
gaggagatctgcaggttcaggccatacagctgtccatacgcaggttcagagtgcctgatc
gcaggcgatgttccgatgctcgtgtctcatctcatcaacgaccacaaggtggacttgcac
gaaggctgcacctttaaccaccgctacgtgaagtccaacccttacgaagtggaaaacgcg
acatggatgctcactgttttcaagtgttttgggcagcacttctgcctccactttgaggcg
ttcctgctgggcatgtccccggtgtacatggcgttcctgcggttcatgggggaggagagc
gaggctcggggcttctgctacagcctggaggtgggcgggaacgggcggaagctgacgtgg
cagggcacgccgcggagcatccgggacgggcacaagaaggtgcgggacagctttgatggg
ctcatcatccaccgcaacatggccctcttcttctccagcggcacccggcaggagctcaag
ctgcgggtgaccggccgcatctggaaggagcagtga
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