Hordeum vulgare subsp. vulgare (domesticated barley): 123405160
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Entry
123405160 CDS
T11213
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123405160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123405160
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123405160
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
123405160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
123405160
NCBI-ProteinID:
XP_044954894
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Position
6H:99994965..99999667
Genome browser
AA seq
306 aa
AA seq
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MGDLRLRLNQTQRVRLEAALHEIQTLAPAAAAAAAVTFADNIPVNPEDSILKGHGTSDQD
GEVVATVCGVVERVQNLVCVRALRASEWIIVVHALIFLLDLLRYKPQKGDIIIGRVSERR
RTDVDELNMRSILEENDLVCAEVRHIQHDGSLDLQPRSQKYGKLQRGQLLTVPAYLVKRR
KQHFHHLEQYDADLILGCNGFIWVGEHVVVDEETNSNEEQHKLSMEVEAFTPLATRRHIC
RLANVVRMLSALGFTLTVELIIQTVEASLASNIEINNMLGAQFYVQTAEREAKRRADLSR
RMNGPW
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgggagacctccgcctacgactgaaccagacacagagggtccgcctcgaggccgcactc
cacgagatccagaccctcgcccccgccgccgcagccgcagccgccgtcacctttgcggac
aacatccccgtcaaccccgaggacagcatcctcaaagggcatggcacgtctgatcaggat
ggggaggtcgtcgcgacggtgtgcggcgtggtggagcgggtccaaaatctcgtctgcgtg
agggcgctccgggcaagtgaatggattattgtagtgcacgctctcatttttctcttggac
cttttgaggtataagccacagaaaggggatatcattattggccgagtcagtgagagacgg
agaactgatgttgatgagcttaatatgcggagtatacttgaagaaaatgaccttgtttgt
gctgaagttcgtcatatccaacatgatggatctcttgacctacagccaaggagtcaaaaa
tatggaaagcttcagaggggtcaattgctcacagtacctgcctatttggtaaaacggcga
aagcagcatttccatcatcttgagcaatatgatgccgatttgattcttggttgcaatgga
ttcatctgggtcggcgagcatgtcgtggtggatgaagagactaactcgaatgaagaacaa
cataagttgagcatggaagtggaggcttttaccccactagcaactagaaggcacatttgc
cggcttgccaatgtggtgcgcatgctttcagcccttggattcactctgaccgttgaactg
ataatccagaccgttgaagcaagtctagcatcaaacatcgagataaacaacatgctcgga
gctcaattttatgtccagacagcggagagagaggccaagcgtcgagcggatctctcgaga
aggatgaatgggccatggtaa
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