Hordeum vulgare subsp. vulgare (domesticated barley): 123405168
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Entry
123405168 CDS
T11213
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg00040
Pentose and glucuronate interconversions
hvg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123405168
Enzymes [BR:
hvg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123405168
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123405168
NCBI-ProteinID:
XP_044954900
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Position
6H:complement(104145457..104146684)
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AA seq
382 aa
AA seq
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MAILLFLFFTSMLSISYCSPLPVNAYGSDILVRRQQTLEHCGTGNPVDDCWRCDPGWADN
RQRLADCAIGFGRNAMGGKGGRTYVVTNPGDEDPANPAPGTLRHGLVQNEPLWIIFACNM
TIRPKQELLVSSHKTVDGRGASVVVGEGGACFTVRNGSNVIIHGITIRGCRPAPKSSAKT
SDLSDGDGISLFGARDVWVDRCTLESCADGLVDVIEASTSVTVSNCLLTKHNKAMLLGHN
DAFEDDRAMRVTVAFNRFGPGLVQRMPRCRFGVFHVVNNDYVNWGKYAIGGSASPTILSR
GNRFCAGKEKEVTKRDGDSPKSEWQKWSWISDGDLMFNGAFFTASGGSGPEVKAPSFAKP
ASLVAPMTASAGALSCSKGSVC
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggccattctcctcttcttattcttcacatccatgttatccatttcctactgttcgcca
ttgccggtcaatgcctacggtagtgacatattagtacgccgacaacaaacgcttgaacac
tgcggcaccggcaaccccgtcgacgactgctggcggtgtgaccccggctgggccgacaac
cggcagcggctcgcggactgcgccatcggcttcggccgcaacgccatgggcggcaagggc
ggcaggacatacgtcgtaacgaatcccggcgatgaggacccggccaaccccgcccccggc
acgctccgccacggcctcgtccagaacgagcccctctggatcatattcgcgtgcaacatg
acgatccgtcccaagcaggagctcctcgtgagctcgcacaagacggtcgacggccgcggc
gccagcgtcgtcgtcggcgagggcggcgcgtgcttcacggtgcgtaacgggagcaacgtg
atcatccacggcatcaccatacgcggctgcaggccggcgcccaagtcgtcggcgaagacg
agcgacctgtcggacggcgacggtatcagcctgttcggcgcgagggacgtgtgggtggac
cggtgcacgctggagtcttgcgccgacgggctcgtggacgtgatcgaggcctccaccagc
gtgaccgtctccaactgcctcctgaccaagcacaacaaggccatgctcctcggccacaac
gacgccttcgaggacgacagggccatgcgggtcaccgtcgccttcaatcgcttcgggccg
ggcctcgtgcagaggatgccgaggtgccggtttggggtgttccacgtcgtcaacaacgat
tacgtgaactgggggaaatacgccatcggcggcagtgcatcgccgaccatacttagccga
ggcaacaggttctgtgctggcaaggaaaaagaggtgacgaagcgcgacggcgactcgcct
aagagcgagtggcagaagtggagctggatatccgacggcgacctgatgttcaacggtgcg
ttcttcacggcgtccggcggatcggggcctgaggttaaagcccctagttttgccaagccc
gcctctttggtggcgccgatgaccgcctccgcaggagctctctcgtgcagcaagggttct
gtgtgctga
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