Hordeum vulgare subsp. vulgare (domesticated barley): 123407023
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Entry
123407023 CDS
T11213
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123407023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123407023
Spliceosome [BR:
hvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123407023
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Motif
Pfam:
PRP38
PRP38_assoc
Bee_toxin
Motif
Other DBs
NCBI-GeneID:
123407023
NCBI-ProteinID:
XP_044955988
UniProt:
A0A8I6YH73
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Position
7H:complement(27315273..27319328)
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AA seq
397 aa
AA seq
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MELQTSGRPIEVLMEKVLSMNIVSSDYFKELYKIKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKLFTMKLTVNQMHGLLKHPDSPYIRAIGFLYLRYAADPKTLWTWYEPYIQ
DDEEFSPGSNGKMTTMGVYVRDVILGQYYFDSLLPRVPLLILRQVTAHLEKMKLPTKQSG
ITGDSSRLGSDDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRKTLPSVRERERSHDG
GHAKSPPRKHRSQSRERSRDTERDRSDRDRGRYKDREHGRQSRDNRDRDYRRSSYSDRDV
ERRGHERRDRDSDRNGRSSGRRSRSRSRSRSPSRGRTNGDSHRSSPFGKAPESSNLAKLK
DLYGDATNAKDDAGDDRAPRRDSGTEEVIRLGGARWR
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcagacgtcggggcggcccatcgaggtgctcatggagaaggtgctgtcgatg
aacatcgtctcctcggactacttcaaggagctctacaagatcaagacctaccacgaggtc
atcgacgagatctacaaccaggtggaccacgtcgagccatggatgacgggcaactgccgc
ggcccgtccaccgccttctgcctcctctacaagctcttcaccatgaagctcaccgtcaac
cagatgcacggcctgctcaagcacccggactccccctacatcagagctattggcttcctg
tacctgcgttatgctgcggacccaaagaccttatggacctggtatgagccctacattcaa
gatgatgaggagttctcccctggatccaatggaaaaatgacaactatgggcgtttatgtg
cgtgatgtcatccttggtcagtactacttcgacagtcttcttccgcgagtgcctctccta
attctgcgacaggtaactgcccatcttgagaaaatgaagctcccaacaaaacagtcaggg
ataactggggattctagtcgccttggttcagatgatactgcccggcggcctccttcagta
aaggcttctctgtccgtctcttttggacagcgtgctccacaccgtgcatccacaagggac
tcgtccccagtccgaaagacattgccttctgtacgagaaagggaaaggagccatgatggc
ggtcatgccaaatctccaccaaggaagcaccggagtcagagccgtgagcgcagtcgtgac
actgagagggaccgttcagatcgtgaccgtggcaggtataaggatagggagcacggccgg
caaagccgtgataatagagaccgtgactaccgccgctcgagctattcagacagggatgtc
gagaggcgaggccatgaaaggcgggacagggactctgatcgaaacgggcgttcgagtggc
cgccgaagcaggagcaggagcaggagcaggagtccaagccgtggcaggaccaatggcgac
agccatcgttccagcccgtttggtaaagctccggagtcatccaacctggcgaagctgaag
gatctgtacggtgatgctacaaacgcaaaggacgatgctggcgatgatagagctccccgc
agggattccggaactgaagaggtgatcagattgggaggcgccaggtggaggtga
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