Hordeum vulgare subsp. vulgare (domesticated barley): 123407127
Help
Entry
123407127 CDS
T11213
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
123407127
Enzymes [BR:
hvg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
123407127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
123407127
NCBI-ProteinID:
XP_044956122
LinkDB
All DBs
Position
7H:242617131..242621825
Genome browser
AA seq
681 aa
AA seq
DB search
MAKLRYYFCCFHCRRTSTCHGCRSLVHCCLGPPREREAGDAMDGVKLKVTSRYVIIKNDI
FELTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDIVWNPPGQRTGIFDVIKGTEFRI
IHHDENQAEVSFTRSWDPSQEGKAVPLIIDKRFIVLRGSSGFYTYGIYEHKAGWPDFGIG
ETRVAFKLRKDKFHYMAMADNRQRIMPMPDDRLPPRGQQLAYPEAVLLVDPINPKLRGEV
DDKYQYSCEDRYNSVHGWVSSDPPIGFWQITPSDEFRTGGPLKQNLTSHVGPTMLAMFLS
AHYAGDDLSPKFTNGEYWKKVHGPVFMYLNSSQDGSDPSLLWEDAKVQMMMEKQSWPYDF
ALSEDFQKTEQRGCISGRLLVRDRYIIEDEDLYAASAYVGLALPGEAGSWQRECKGYQFW
CQADTDGSFYIKNIVTGNYNLYAWVPGFIGDYRFDATLTISSGDDIYLGDLVFEPPRDGP
TMWEIGIPDRSAAEFYVPDPNPNYVNRLFINHPADRFRQYGLWERYAELYPDRDLVYTIG
ESNYSTDWFYAQVTRRRGDEETYQATTWQIRFSLDAVPPNSTYKLRVALASSANAELQVR
FNDEARAAPHFTTGLIGRDNAIARHGIHGLYWLFSMDVSGAWLVRGMNIVYLKQPRNQSP
FQGVMYDYLRLEGPCVVRAAD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacttaggtactacttctgctgcttccactgccgccgcacctccacatgccac
ggctgtaggagcctggtgcactgttgtttgggccctccacgggaacgggaagccggcgac
gccatggacggtgttaagctcaaggtcaccagcagatacgttataataaaaaacgacata
ttcgagctgacgctgtccaaccccgacggtattgtaactggcgtgcggtacaatggtgtg
gacaatcttatggagattcttaacaaagaagacaatcgagggtattgggacattgtttgg
aacccaccaggacagcgaactggaatatttgatgtgatcaaaggcacagagttccgcatc
atacatcatgatgaaaaccaggctgaggtctccttcactagatcatgggatccttctcag
gaagggaaagctgttcctctcatcatcgacaagaggttcatcgtgcttcgtggttcctcg
ggattctacacctacggtatctatgagcacaaggcagggtggcctgattttggcattggg
gagaccagggtggccttcaagcttagaaaagacaagttccattacatggcaatggctgac
aacaggcagagaataatgccgatgcctgatgaccggttgcctccccgcggccagcaatta
gcataccctgaggctgtcctccttgtggacccaattaatcctaaactcagaggggaggtc
gatgacaagtaccaatactcgtgtgaagaccgatacaatagtgtccatggatgggtgtca
tctgatcctccgattggcttctggcaaatcacgccgagcgacgagtttcgtactggagga
cctcttaagcagaacttgacatctcatgtcgggcccactatgctcgccatgtttcttagt
gctcattatgccggggatgacctttcgcccaagttcacgaatggagaatattggaaaaag
gttcatgggccggtgttcatgtaccttaactccagtcaggacggatctgacccaagtcta
ctatgggaggatgcaaaagttcagatgatgatggagaagcagagctggccctatgatttt
gcactttcagaggatttccagaagactgaacaaagaggctgtatctctggtagattactt
gtaagagacaggtatattatagaggatgaggatctttatgccgcatcagcctatgtaggc
ctagcattaccaggagaggctggatcgtggcaaagagagtgcaagggataccaattctgg
tgtcaagcagacacagatggtagcttctacataaagaacattgtaactggaaactacaat
ctatatgcgtgggttccaggtttcatcggggactacagattcgacgccacactaacaata
tcttcaggggacgatatttatctgggcgacctcgtgttcgagccaccgagggacggcccg
actatgtgggagatcggaattcccgataggtctgctgccgagttctatgttccggacccc
aaccccaactatgtcaacagactgttcatcaaccatcccgctgacaggttcaggcagtat
gggctttgggagagatacgcagagctgtatcctgaccgtgatctggtatacaccatcggc
gaaagcaactacagcactgactggttctacgctcaagttaccaggagaagaggcgatgag
gagacgtaccaggccaccacatggcagataaggttcagcctcgacgccgtccctcctaac
agcacgtacaagttgcgggtggcgctcgcgtcttcagccaacgctgaactgcaggtccgt
ttcaacgacgaggcacgggctgcgcctcacttcacgacggggctcatcgggcgcgacaac
gcgatcgcgaggcacgggatccatggcctctactggctgttcagcatggacgtgagcggc
gcctggcttgtccgggggatgaacatcgtctatctgaagcagcccaggaaccagagcccg
ttccagggggtcatgtacgactacctgcgcctggaagggccctgtgttgtgcgtgccgct
gattga
DBGET
integrated database retrieval system
