Hordeum vulgare subsp. vulgare (domesticated barley): 123407132
Help
Entry
123407132 CDS
T11213
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123407132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123407132
Spliceosome [BR:
hvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123407132
Complex C
U5 SnRNP specific factors
123407132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
123407132
NCBI-ProteinID:
XP_044956133
UniProt:
A0A8I7BDF4
LinkDB
All DBs
Position
7H:complement(48744288..48753992)
Genome browser
AA seq
2360 aa
AA seq
DB search
MWNGGPPPPMGAAPPPPGTAGAGLPPPPPPPAAAPPPQAGQPLTPAELEAQLVEKARKWH
QLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHA
VYKLLENMPMPWEQVRDVKILYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDR
RHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDPEEDGAVYNWFYDHNPLVKTNF
INGPSYRKWNLSLPIMATLYRLAGQLLSDLTDRNYFYLFDMESFFTAKALNMCIPGGPKF
EPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLCIYHTPMIMY
IKTEDPDLPAFYYDPLINPITSTSKVDRREKKASEEDDEDDFSLPEGVEPLLNQTPLYTD
TTAAGISLLFAPRPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVL
NELHHRPPKAQKKKHLFRSLQATKFFQSTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYL
HLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLAD
GLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRV
WLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDA
MPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHY
NRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHW
LESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHE
ALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLF
PNWVKPADSEPPPLLVYKWCQGINNLQDIWDTSDGQCVVMLQTKFEKFFEKIDLTLLNRL
LRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFIVQYYGLVLDLLLLGLT
RASEIAGPPQMPNEFLTYTDTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRYLTE
HPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVS
VYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDDE
HMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKI
QTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRS
GMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRG
IPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI
QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFT
LWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQ
VLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWQMSKPSLVSESKDVFDQK
ASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAF
GNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQ
IIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQ
LAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQA
CLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSYTAFSRLVLILRALHVNNEKAKMLLK
PDKTIVTEPHHIWPSLTDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIILGAE
IAPPSQQRQQIAEIEKQSRETNQVTAQTTRTVNVHGDELIVTTTSPYEQAAFASKTDWRV
RAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQVAGFLYGLSPQD
NPQVKEIRCISIPPQHGTHQMVTLPANLPEHEFLADLEPLGWMHTQPNEAPQLSPQDLTS
HAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWARGNKDNGSNPQGYLPTH
YEKVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFL
EFSNIEEGEVAEGDREDTFS
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggcggaccgccgccgcccatgggggccgcgccgcctcccccgggcacggcc
ggcgcgggcctgcccccgccccctcccccgcccgccgcggcgccgcccccgcaggccggc
cagccgctcaccccggcggagctcgaggcgcagctcgtcgagaaggcccgcaagtggcac
cagctcaactccaagcgctacggcgacaagcgcaagttcggcttcgtcgaggcgcagaag
gaggacatgccccccgagcacgtccgcaaaatcatcagggaccatggggacatgtcttca
aagaagtacaggcatgacaagcgtgtttatcttggagcactcaaatttgtgcctcatgcc
gtttacaaactactggagaatatgccgatgccctgggaacaagttcgcgatgtgaagatc
ttgtaccatatcactggcgccataaccttcgtaaacgagatcccatgggtagttgagccc
atttacttggcgcagtggggttctatgtggatcatgatgcgaagggagaagagagatagg
cggcatttcaagagaatgcgctttcctccatttgatgacgaggaacctccactggattat
gctgataatttgttggacgttgaaccactggaggctatacaattggagttggatccagag
gaagatggagctgtgtataactggttttatgatcacaatcccctcgtgaagaccaatttt
ataaatggtcccagctataggaagtggaatctgtctcttcccataatggcaacactttat
cgcctcgctggtcaacttttgtcagacttgactgatcggaattatttctatttgtttgac
atggagtctttctttactgccaaagcacttaacatgtgcatcccaggaggtccaaagttt
gagccattgtaccgtgatatggagaagggggatgaggactggaatgaatttaatgacatc
aataaactcatcatccgtcaaccacttcggaccgagtacagaattgcgttcccgcacctg
tacaataacaggccaaggaaagtgagactttgcatatatcatactcctatgataatgtat
atcaagacagaggatccggatctgcctgcattttattatgatcctctgataaacccgatc
acttcaaccagcaaggttgatcgtcgggagaagaaggcaagtgaagaggatgatgaagat
gactttagtctccctgagggtgtggagcctcttttgaaccaaactccactttacactgac
acaacagctgccggcatttcattgctttttgctccaaggccttttaacatgagatccggt
agaacacgccgcgctgaggatatccctcttgtatctgagtggttcaaagagcactgtcca
ccagcgtatccagttaaggtcagggtgagctaccagaagctgctgaagtgctatgtgctc
aatgagctacatcataggcctcctaaagcacagaagaagaaacacctgttccgttcactg
caagcaacaaaattcttccaaagtacagagcttgattgggcagaagctgggttgcaagtt
tgcaagcagggctacaacatgcttaacttgttgattcacaggaagaatctgaactatctt
cacttggactacaatttcaatttgaagcctgtgaagacactcacaacaaaagagaggaag
aaatctcgttttggaaatgctttccacttgtgtcgtgagattctgcgacttacgaagctg
gttgttgatgcaaacatccagtttcgcttgggaaatgttgacgcctttcagttggccgat
ggtctgcaatacatattctctcatgttggtcagttgactggtatgtacagatacaagtat
cgcctgatgcggcaaattaggatgtgcaaagatctgaagcacttgatatactaccgtttc
aacactggtcctgttggaaaaggacctggctgtggtttttgggctccaatgtggagagtg
tggctatttttccttcgtggtattgtgcccttgcttgaaaggtggctaggtaatttgttg
gccaggcagtttgaaggtcgccattcaaaaggagttgctaaaacagtaaccaagcaacgt
gtcgagtctcactttgatctggaacttcgagctgcagttatgcatgatgtccttgatgct
atgccagagggcatcaagcaaaacaaggcccggactatactgcaacatcttagtgaggca
tggcgctgctggaaggcaaatattccctggaaggtccctggcctgccagttcctattgag
aacatgatactccgctatgtgaagtccaaggctgattggtggacaaatgtcgctcactac
aatcgtgagcgtatccggcgtggtgctacagttgacaagactgtctgccgcaaaaatctt
ggaaggttaactcgtttgtggttgaaggcagaacaagagaggcaacacaactacttgaaa
gacgggccatatgtgacacctgaagaagcagttgctatttatacaaccacagtccattgg
ctggagtcaaggaagttctcaccgattcctttccccccactctcatacaagcatgatacc
aaacttcttatattggcactggaaaggctaaaagagtcatacagtgtggcagtaagatta
aatcagctgcagcgagaggaacttggtttgatagagcaagcatatgataatccacatgaa
gctttgtcaaggataaaacgacatcttcttactcagcgtgcttttaaagaagttggtatt
gagtttatggatctgtacagctacctgatcccggtatatgaaattgagcctcttgagaaa
attactgatgcataccttgaccagtacttgtggtatgaaggggacaaacgccacctcttc
ccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaagtggtgc
caaggtataaataatttgcaggacatatgggacactagcgatgggcagtgtgttgtgatg
ctgcagacaaaatttgagaagttctttgaaaaaattgatctgactctgttgaacaggctt
ctacggttggtcttggaccataacattgctgattatgtcactgcaaagaataatgttgtg
ctgtcttacaaggatatgagtcacacaaattcttatgggcttattcgaggtcttcagttt
gcatcttttattgtgcagtactatgggctggtgctggatctcctactacttggtttaaca
cgagctagtgagattgcagggccgcctcagatgccaaatgagttccttacatatactgac
actaaagttgagacaaggcatcccatcaggctgtattctcgatatatcgataaggtgcat
ataatgttccggttcactcatgaagaggcaagggatttgattcagcgttacttgacagag
catcctgatcctaataatgagaacatggttggttacaacaacaagaaatgttggcctaga
gatgcaagaatgaggctcatgaagcatgatgttaatctgggaagaagtgtattttgggat
atgaagaaccgcctgccaaggagtattactacattagaatgggagaatggctttgtctct
gtatacagcaaggataacccaaacctgctctttagcatgtctgggtttgaggtccgtata
ctgccgaagatacgtatgactcaggaggcattcagcaacacaaaagatggagtatggaac
ttgcagaatgagcagacaaaagaaaggacagctattgcatttttgagggttgatgatgaa
cacatgaaggtgtttgagaaccgtgtcaggcaaatccttatgtcatcagggtcaacgaca
tttaccaagatagtcaacaagtggaacactgctctcattggcctcatgacatatttccgt
gaagcaactgttcatacacaggaactactggatctgcttgtaaaatgtgaaaacaagatc
cagactcgcataaagattggcctgaactcaaagatgcctagcaggtttccaccagttatc
ttctatacacccaaggaaattggaggtttgggtatgttgtcaatgggtcacattttgata
ccacagagtgatcttaggtacagcaaacagacagatgttggtgtgacacattttcgaagt
ggtatgagtcatgaagaggatcagcttatccctaacttgtatcgctacatccaaccatgg
gagagcgagtttattgattctcagcgtgtttgggctgagtatgctttgaagaggcaggaa
gcacaatcgcagaataggcgcttaacacttgaagatctggaagattcatgggatagaggc
ataccccgtatcaacactttattccaaaaagaccgccacactttggcctacgacaaaggg
tggagggtgcggacagacttcaagcagtatcaagtgctgaaacagaacccattctggtgg
acacatcagcggcatgatggaaagttatggaatctgaataactacagaactgatgtcatc
caagcacttggtggtgtggaaggtatcctggaacataccttatttaaagggacatatttc
cccacttgggagggtttgttttgggagaaggcttcaggtttcgaggaatcaatgaagtac
aaaaagctgacaaatgcacagcgttctgggcttaatcaaatccccaacagaagatttacc
ctctggtggtcgccaaccattaatcgtgcaaacgtatatgttggtttccaggttcagcta
gatctgactgggatattcatgcatggtaaaattccaaccctgaagatctctctgattcag
attttccgtgcacatctttggcagaaggtccatgaaagtgttgttatggatctttgccaa
gttctggatcaggagttggatgcactggagattgagacagtacagaaggagacaatacat
cccaggaagagttacaagatgaacagttcatgtgcagatgtcctcctttttgctgcacat
aggtggcagatgtccaaaccaagcttagtttccgagtcgaaggatgtttttgatcagaaa
gcgagtaacaagtactggattgatgtgcaactacgatggggagactatgattcacatgac
atagaacgttatacaagagcaaaatttatggactacacgacagataatatgtccatctac
ccttctccgactggagtgatgattggacttgatctagcttataatttgcactcggccttt
ggcaactggttccctgggtcaaagcccctcctccagcaagcaatgaacaagatcatgaag
tcaaatcctgctctgtatgtgctgagagagagaataagaaagggtcttcagctgtattca
tctgaacccaccgagccatatctgtcttcacagaactatggagagatattcagcaatcaa
atcatatggtttgtggatgacacgaatgtctatcgagtcaccattcacaaaacctttgag
ggtaacctgaccaccaaaccaatcaatggtgctatctttattttcaatccaagaactggg
caactatttctgaaggtcatccacacaagtgtatgggcaggacaaaagcgtctagggcag
ctggccaagtggaaaactgccgaggaggttgctgcattagttcggtctcttcctgtagaa
gagcagccaaagcaaattattgtgacaaggaagggtatgttggatccattggaagtccat
ctgcttgatttccctaacattgttatcaagggtagtgagttgcagctgccattccaagct
tgcttgaagattgagaagtttggtgatcttattctcaaggctacggaaccacagatggtt
ctttataacatatacgatgactggctgaaaagtatctcgtcctacaccgcattctctcgt
cttgtacttatattacgagcattacatgtcaataatgagaaggctaagatgttgctgaag
cctgacaagacaattgttacggaaccacatcatatctggccatctttgactgacgagcag
tggctgaaggtcgaatgcgcgctcagggatctcattctttctgattatgcgaagaaaaac
aacgttaatacttctgcacttacgcaatctgagattcgtgatataatactgggtgctgaa
atagctccaccgtcacagcagaggcaacagatagctgagattgagaaacagtcccgagag
acaaatcaggtaactgcacagacaacaaggacagttaatgtgcatggagatgagctcatt
gtcacaacaaccagtccgtatgagcaagcagcatttgcatcgaagacagattggcgtgtc
agggccatctctgctacgaacctgtatctccgtgtcaaccacatttatgttaactcagat
gatataaaggagactggctatacttacatcatgccaaagaatatattgaagaagttcata
tgcatagcagatctacggacacaggttgcaggtttcctgtatgggctgagtccacaggat
aatccccaagtcaaggagatcagatgcatatccattccgccacagcatggaactcaccag
atggtcactttgccagcgaatctcccagagcatgagttccttgctgacctggagccgttg
ggatggatgcatacccagccgaatgaagctcctcagctatcacctcaggatttgacatca
catgctaaaattttggagaacaacaaacagtgggatggtgagaagtgcatcattttgacc
tgcagcttcaccccaggatcgtgctcgttgactgcatacaaattgacaccaagtggttat
gagtgggcccgtggcaacaaggacaacgggagcaacccacaaggttatcttccaactcac
tacgagaaggtccagatgcttctcagcgaccgcttccttggattctacatggttccggac
aacgctccgtggaactacaacttcatgggagtcaagcacgacccgctgatgaagtacagc
atgaagctgggcacaccccgcgacttctaccacgaggaccacaggccaacacacttcctg
gagttcagcaacattgaggagggcgaggttgctgagggggacagggaggacaccttctcg
tag
DBGET
integrated database retrieval system
