Hordeum vulgare subsp. vulgare (domesticated barley): 123407170
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Entry
123407170 CDS
T11213
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123407170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123407170
Spliceosome [BR:
hvg03041
]
Complex B
Other components
Prp19-related factors
123407170
Complex C
123407170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
zf-CCCH
RRM_YTH1
RRM_3
zf-CCCH_3
zf-CCCH_10
RRM_occluded
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
123407170
NCBI-ProteinID:
XP_044956182
UniProt:
A0A8I6Z004
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Position
7H:complement(49963864..49967493)
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AA seq
498 aa
AA seq
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MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRKAAAGIDYDSSYGKARPNDTILKLQRTSPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQPPDDETIRTLYIGGLDNRVS
EQDLRDQFYAHGEIESIRMVIQRACAFVTYTTREGAERAAEELANKLVIKGVRLKLMWGK
PQAPRPDDDEAGRQGHVSHGGLLPRAVISQQQSSDQPQPPGMEGQQQVAPPGSGYFNIPP
PPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHAGQAQASSSSGQGYPMRPPLPPYYH
GGAQYPPYYPPPPYGGGYMAPPRMPYPPQYPPYRPMLAPPAQQPQGSSSQQPAGQQQAQA
PPAQQQPPPAAAAAAAQN
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctgcgggacgcgcaggcggacggctgggagaggtccgacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgctgagagcagaatat
gacaaggaatgcaagatctgtgctcgcccttttactgtcttccgttggagacctggtcgg
gatgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgc
caggtctgccttctggaccttgaatatggtctgccagttcaggttcgcgatactgcgctc
gccatcaattcgaacgatgcaattccaaggagtgatgtcaaccgcgagtactttgcagaa
gagcatgaccgtaaggctgcagctggcatagactatgactcttcatatggaaaggcccgt
ccaaatgataccattctgaagcttcagagaacttcaccatattacaagaggaaccgagct
catgtttgcagtttctatgtgcggggtgaatgtaccagaggcgctgagtgcccctatcgc
cacgagatgcctgagacaggggagttatcccagcagaacatcaaagatcgctactatgga
gttaatgacccagttgctctcaagcttttgggtaaggcaggtgagatgccatctctacaa
ccaccagatgatgagactataaggaccctctacattggtggacttgataaccgagtcagt
gagcaggatttgagggatcagttttatgcacatggtgagatcgaatccatcaggatggta
atccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctgca
gaggagcttgctaacaagctagtcatcaagggtgtgcgcctgaagctcatgtggggcaag
ccccaagccccaaggccagatgatgacgaggctgggaggcaaggccatgtttcccatgga
ggattactccctagggctgttatatctcagcagcagagcagcgaccagcctcagccacct
gggatggagggacagcaacaagtggcaccaccaggatcaggctacttcaacattccacca
ccgccagcggtggatcagcggatgtacccttcgatggacccccagagaatgggcgctgta
gtcaggtcgcaggagggcgatggcagcaagccagggccacagcacgccgggcaagctcag
gcgtcaagcagctcaggtcagggctatcctatgcggccgccgctgccgccttactaccat
ggtggtgctcagtaccctccatactacccacccccaccatatggtggcggttatatggcc
ccgcctcgcatgccgtacccaccccagtatccgccataccggccaatgctggcgccccca
gcacagcagccacaagggagttcatcccagcagccggcagggcagcagcaggctcaagca
cctcctgctcagcagcagccaccgccagcggcggcagcagcggcggcccagaactga
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