Hordeum vulgare subsp. vulgare (domesticated barley): 123407184
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Entry
123407184 CDS
T11213
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04120
Ubiquitin mediated proteolysis
hvg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123407184
04120 Ubiquitin mediated proteolysis
123407184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hvg04121
]
123407184
Enzymes [BR:
hvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123407184
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123407184
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
FlxA
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
123407184
NCBI-ProteinID:
XP_044956196
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Position
7H:complement(137564703..137570086)
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AA seq
494 aa
AA seq
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MIRLQTYAAFSLLATVTSVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCLAWQL
VKRVFLGTLREAEVERLNEQSWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMLFLLVVDCLFLSNSLGSLIQKREASVAIFFSFEYM
ILATSTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRISDYVRYRKITSNMNERFPDATPDELDTSDVTCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASARQHGAQPGVQPGAGAG
TPNSGGAPTENVNMRQAKLEAAASAASLYGRSFAYPPVNTLNRHSGPLHATPSTSQSGEA
STSTGHPLEPQPSYSTGPVSSITSSRDPENSLQKAYEKAIRSQIEVLQIQLQMMQQGATT
TSATGNESAEQAEK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgatccggttgcagacgtacgccgcgttcagcctgctggcgacggtaacgtcggtgtac
tatgcgttcagcagcagggagcagttctacccggcgatggtctacctctccacctccaag
atatgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcctcgcctggcagctc
gtgaagcgcgtcttcctggggacgctccgggaggccgaggtcgagcggctcaacgagcag
tcgtggcgggaggtcgtggagatcctcttcgcggtcaccatcttccgccaggacttctcc
gtctctttcctcgccatggtcgccgccctgctcctcgtcaaggctctgcactggctcgcg
cagaagagggtcgagtacattgagaccacgccctccgtgccaatgctgtcgcacataagg
atcgtgtccttcatgctattccttcttgtcgtcgactgcctcttcctgtcgaactcgctg
gggtcactgatacaaaagcgggaggcatctgttgcaatcttcttttcctttgagtatatg
atactagcaacatcgacggtatcgacattcgtgaagtatgtattctatgtcagcgacatg
ctaatggaaggtcaatgggagaaaaaggcagtgtatacattttatttggagcttatcagt
gaccttgtgcacttgtctttatatatgctcttcttcatagcgatcttcctgaactatggt
gtcccactgcacttgattcgtgagctgtatgagaccttccgcaacttcagaattcgcatt
tcagattatgtacgctacagaaagataacttccaacatgaatgaacgctttccagacgct
acaccagatgagcttgatacgagtgatgtcacatgtattatttgccgtgaagagatgacc
acagcaaagaagctgctttgtgggcacttgttccatgtacattgtttgaggtcatggcta
gagcgccaacatacttgcccaacatgtagagctccaattatccccccagataatggacgt
gcagcatcagcacgacagcatggagctcaacctggagttcagcctggtgcaggcgctggt
actccaaattcaggaggagcaccaactgagaacgtgaacatgcgtcaagcaaaacttgag
gctgctgcttcagctgcttccttgtatgggagatcatttgcttatcctccagtgaacact
ttgaataggcattcaggacctctgcatgctacaccaagtacttcacaatcaggagaagca
agtacttccaccggccatccattggaacctcagccttcttattcaactggtccagttagt
tcaataacaagcagccgggaccctgaaaattcactacaaaaggcatatgaaaaggctata
aggagccagatagaggtgttgcaaatccaattgcaaatgatgcagcaaggggccaccacc
acatcggcaactggcaatgagagtgctgagcaagccgaaaaataa
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