Hordeum vulgare subsp. vulgare (domesticated barley): 123408083
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Entry
123408083 CDS
T11213
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123408083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123408083
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123408083
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123408083
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
123408083
NCBI-ProteinID:
XP_044957217
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Position
7H:25021437..25022291
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AA seq
272 aa
AA seq
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MAAITSLLPTHTVVTIDTEFPGAVHDSTTPRDQRSPKEAYALVRSNVDHLKHLLQLGLTL
SGPGGSHPVVWQFNFRGFDEGRHPHAPESIAMLKAHGMDFGRLREDGIDPGDFADEFMRS
GLNHRRPRRGKAAQEPLTWVAFSGSYDFAYLAKLLRRGRGLPQKLEHFTRLVEKLFGQWV
LDARYIATTCGSHGGLEKVAAELGVQRRAGVAHSAGSDSLLTADVMLAIVLCLEGPPNYQ
DVRRIHAGKIDGLVKLDLQTCKDVTPMLYCFK
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatcacgtcgctgctgccgacgcacacggtggtgaccatcgacacggagttc
ccgggcgcggtgcacgactcgaccacgccgcgcgaccagcggagccccaaggaggcctac
gcgctcgtcaggagcaacgtggaccacctgaagcacctactgcagctcggactcacgctc
tccgggccagggggcagccaccccgtcgtgtggcagttcaacttccggggcttcgacgag
gggcgccacccgcacgcgccggagtccatcgccatgctcaaggcccacggcatggacttc
ggcaggctccgcgaggacggcatcgacccgggtgactttgccgacgagttcatgcgctcc
ggcctcaaccaccgccgcccgcgccggggcaaggccgcccaagagcccctcacgtgggtg
gcattctcgggctcctacgacttcgcctacctcgccaagctgctccgccgcggccgcggg
ttgccgcagaagctcgagcacttcacgaggctcgtggagaagctcttcggccagtgggtg
ctcgacgccaggtacattgccacgacctgcggcagccacggaggcctggagaaggtggcc
gccgagctcggcgtccagcgccgcgccggcgtcgcccacagcgccggatccgacagcctt
ctcaccgccgacgtgatgctcgccattgtgttgtgcctcgaggggccccccaactaccag
gacgtgcgcaggatacacgccggaaagatcgatgggctcgtcaaactagacctgcagaca
tgcaaagatgttactcctatgttatattgcttcaagtaa
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