Hordeum vulgare subsp. vulgare (domesticated barley): 123408345
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Entry
123408345 CDS
T11213
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03022
Basal transcription factors
hvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123408345
09124 Replication and repair
03420 Nucleotide excision repair
123408345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123408345
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123408345
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123408345
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123408345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
123408345
NCBI-ProteinID:
XP_044957404
UniProt:
A0A8I6YBE0
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Position
7H:complement(387384763..387394225)
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AA seq
600 aa
AA seq
DB search
MGTMTIGAKYKATLKDRGTGGVLRMSEDKFTFTPNDPRSLMKLSVDFQTIKGHKFNKVDG
SKPTPALLNLSKDSDKGGGYIFEFDNVGNRDLCRDFVARVLGKYQGTVPARPNVPPELSA
VSTGPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDETSKGS
KQKPGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKKLSEKD
FWTKYCRAEYLLRTKNTLAAKAEAAEDEELAMFLKNDDILAKEAKLKIKRVDPTLDMEAD
AGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRSADIESTDTKTV
AEALARSKKEPPPSSVADDASHERLVKAARMTEIEDLQAPRSLPYALLCIKDPREYFDSQ
QANALRPLGSNDGRKARSCSLSTDDAFRHLMDQISSVKMNCPVVQSDVALKVLNELNEGI
SRSRRLNLKNPQDSLLGRLPHRTRDELMDHWMAIQELLRHFWSSYPITTTVLCNKVQRLK
EAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHEHDQQQKSSKAGSKPNGF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggggaccatgacaatcggtgccaagtacaaggccacgctcaaggaccgcggcaccggc
ggcgtcctccgcatgagtgaagataagttcacatttacccctaatgatccacgctcacta
atgaagctcagtgtcgattttcaaaccatcaaaggccataagttcaacaaagtagatggt
agcaaaccaacaccggcgttattgaatctttcaaaagattctgacaaggggggaggctat
atttttgagtttgacaatgttggtaaccgtgatttgtgtcgtgactttgtagctagggtt
ttaggcaaatatcaaggtactgtgcctgctagaccaaatgtacctcctgaattatcagct
gtgtcaactggtccagaacagctcagttctgccgaaatggaacgtcgaatgaaattgcta
cgagaagacagtgaactgcagaagttacataagaagtttgtgcttggcaatattctccaa
gagtctgaattttgggcaacaagaaagaatttacttgacgatgaaacaagcaaaggatca
aaacaaaagccaggtttcaaaagtgccatgctagctgatgttaggccatcagctgatgga
cagacaaataaggttactttcagtctgactactgagattatccatcagatttttgcagaa
aagccagccgtgcatcgggcatttttagattatgtcccgaagaagttgtcagaaaaggat
ttttggacaaaatactgtagagctgagtatctgcttaggacaaaaaatactctagcggca
aaagctgaagctgctgaagatgaggaattagccatgtttttgaaaaatgatgatatactt
gccaaggaggcaaagctcaagataaaacgagttgatccaacattagacatggaggcagat
gcaggggatgactacatccatcttcctgatcatgggattctccgtgatggcagcagagag
acaactgatactgatagtgagttggctaggagaacactttctcaggatctgaatcggcat
gctgcagttgttcttgaagggagatcagcagatattgaatcaactgatacgaagactgtg
gctgaagcacttgcaaggtccaagaaggaaccacctcctagctctgttgctgatgatgct
agtcatgaaagattggtaaaggcggcccgcatgactgagatagaggatctgcaagctcca
cgaagtctcccatatgcactactttgtataaaggatcctagagaatattttgattctcag
caagcaaatgctctgagacctttaggtagtaacgatggaagaaaggcccgcagctgcagc
cttagtacggatgatgcattccgtcatttaatggatcaaatatcttccgtgaaaatgaac
tgtccggttgttcagtcagatgttgctctaaaggttcttaatgaattgaatgaaggaatt
tcacgttcacggaggcttaatcttaagaatccccaagacagtctccttggccgtcttcct
caccgaacacgggatgaacttatggatcattggatggctatccaggagttgctgcgccat
ttttggtcatcatacccaataacaaccacagtcctttgtaataaggttcaacggcttaag
gaagcaatgacacagatatatcagaagttacaggatataaaggaatctgcacagcctgat
gtacggcatgaaatatctcaactcgtaaagcccatgacgcaggcgctggatgctgcattc
aaccatgagcatgaccagcagcagaaatcttcaaaggccgggagcaagcctaatggtttt
tga
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