Hordeum vulgare subsp. vulgare (domesticated barley): 123408524
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Entry
123408524 CDS
T11213
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
123408524
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hvg04040
]
123408524
Ion channels [BR:
hvg04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
123408524
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Motif
Pfam:
Ion_trans
cNMP_binding
DUF6525
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
123408524
NCBI-ProteinID:
XP_044957550
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Position
7H:151205800..151223367
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AA seq
864 aa
AA seq
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MQPDREETSTGTGARSGRSLVRAGIFRIRLDRSGFTSYPLVGVRCLLTRFREFCGMEMYM
GLVDGGCTRTGTHFSTSMHVHVSIHADVAALADFVCGTSLFECQKRDSILVLDVNVLRTG
ITFIYWVGAIGDSVFMSVVLMATLELQKFPTGSAQMCIPVIADTYEDLLRSNTGRLLVHR
STQVAFAGTASGTSDLPHRVTSPFPGKQARKANAVMPEETASSVCPNGRHAPKNEHLMIS
GPLGQCDESDCVDCPLASKNKMLFPRISAPFGNEVHIFVYGQGGGWKKIWSSLPNIPVIN
PHARAVRRWNQFFVVSCLAAIFVNPLFFFLASMDKDNKCIMFSRHSGALTVARYVIDVIY
VLHMLLQSRMAYVDPESRIVGTGDLVDEPKKIIMRYFRGAFIVDLSAMLPLPQLMVQGVI
PNYIGVSGANYAKNLLRATVIVQYAPRIFRFVQLLGGQSANGFIFESAWANFVINLLVFI
LAGHVVGSLWYLFGLQSVNQCLRNSCSTLNITSCAQFIDCGYGIGGQDRVKRQQWFNDSV
SQSCFDTANGVFKYGIYEQSVLLTTEPAINRYIYSLFWGFQQISTLAGNLVPTYNVWEVL
FTKGIITLGLFLFALLVGNMQIFLQSLGKRRLEMQLRRHDVEQWMSHRQLPEDLRRRVRH
AERFCWVAMRGVNEEELLSSLPEDIQRDIRHHFHRFLNKIRLFALKDCGFCDAVCDKLKH
KLYARGSDILSQHQLVEKIIFVVRGKLESINADGSKCPLHEGTVCGEELLTWWFEQQASD
GERMMVHWKAIRTIRCLTNVEAFVLQFTDLERVTLEFSTLLQNPHVIAAIRYDSPSWRTA
AAIHIQIWWRYHQRRLKGAALLQG
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgcagccggatcgggaggagacaagtacggggacgggggcgaggagcggtagatctcta
gtccgcgccggaattttccgcatcaggttggacaggtctggatttacaagctaccctctc
gtgggcgtcaggtgtttgctaactcgcttcagggagttttgtgggatggagatgtacatg
gggttggttgatgggggatgtactaggacggggacgcacttctctacatccatgcatgtg
catgtgtccatccatgcagatgtagctgcgcttgctgattttgtttgcggcacgagcttg
tttgaatgtcagaagcgggattccattcttgtactggatgtaaatgttttaagaaccggg
attacattcatatactgggtgggtgccatcggcgattcagtttttatgtctgttgttctt
atggcaaccttggagctgcagaaatttcctacgggaagtgcacaaatgtgtatacctgtc
atagctgacacatatgaagacttgttgagatccaatactggtcgtctgctcgttcataga
tctactcaagttgcttttgcgggaactgcatcaggaaccagtgacttgccacatagggta
acatcacctttcccaggaaagcaggcgaggaaggcaaatgcagtcatgcctgaagagact
gcatcaagtgtctgtccgaatggcaggcatgctccaaagaatgaacacttgatgatttct
ggacctttggggcagtgtgatgaatctgactgtgtagattgccctcttgcctctaagaat
aaaatgcttttcccgagaatttcagctcctttcggtaatgaggtgcatatttttgtgtat
ggccagggtggtgggtggaagaagatttggtcttcccttccaaacattccagttataaac
ccacatgctagggctgttcggcgatggaaccaattttttgtggtatcatgcttggctgcc
attttcgtcaaccctctgtttttcttcctagcttccatggacaaggataacaaatgcata
atgttcagtcggcattcgggagcattaactgtggcaagatatgtgatagatgtaatctat
gttcttcacatgcttcttcagtctaggatggcctatgtggatccggagtcaagaatagtg
ggaacaggagatttagttgatgagcctaagaaaattattatgcgctattttcgtggtgct
ttcatagtcgacttatctgccatgcttccacttcctcagctgatggtacaaggggttatc
cctaactacattggggtatccggtgcaaactatgcgaagaatttgttgcgtgccacagtt
attgttcagtatgccccacgtatcttcagatttgtgcaattacttggtgggcaatctgct
aatggattcatttttgaatcagcatgggctaattttgtgattaatcttctggtatttatt
ttggctggacatgtggttggttcgctttggtacctctttgggctacagagtgttaatcaa
tgtctacggaattcgtgttccacgcttaatataacatcttgtgctcagtttatagactgt
gggtatggcattggtgggcaggacagagtaaagaggcagcagtggttcaatgactcggtg
tcgcagagctgttttgatactgcaaatggtgttttcaaatatggaatctatgaacaatcc
gtgttgctaaccacagaacccgctattaaccgctacatatattcgttattttggggattt
cagcaaataagtactttggcgggtaatctggtcccaacctataatgtatgggaagttcta
ttcacaaagggtatcattaccttggggctgttcctttttgcgttacttgttggtaacatg
cagattttccttcaatcacttggaaaaaggagattggaaatgcaacttaggaggcacgat
gttgaacaatggatgagccacaggcaactcccagaagatctcagaaggagggttaggcat
gcagaaaggttttgttgggtggctatgagaggagtgaacgaagaagagcttttgagcagt
ttaccagaagatattcagagagatatacgccaccattttcatagatttcttaataagatt
cggttattcgctttgaaggattgtggattttgcgatgctgtctgcgacaagttgaagcat
aagttatatgctagggggagtgatattctttctcagcatcagcttgttgaaaaaatcatc
tttgtggtgcgaggtaagctagaaagcatcaatgcggatggaagcaaatgtccattacac
gaaggaactgtgtgtggggaagaactgcttacttggtggtttgagcagcaagcttcagat
ggggagagaatgatggtgcactggaaggcaatacgtaccatcagatgcctaacaaacgtt
gaagctttcgtgctgcagttcactgatttggaaagagttactctggagttttcaacacta
ttgcaaaatccacatgttattgcagcaatcaggtacgactcgccatcctggaggaccgct
gcagcaatccatatccagatatggtggaggtaccatcaaaggcgactgaagggagctgct
ctgttgcaaggttag
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